Re: [Gusdev-gusdev] Re: gusdev mailing list subscription

[pjm <pj...@sa...>]

I think I did `cvs update -d`, where -d creates any new directories. CVS won't
create them by default, assuming you may only have checked out a subset of the
code;

       Use the -d option to create any directories that exist in the reposi-
       tory if they're missing from the working directory.  (Normally, update
       acts only on directories and files that were already enrolled in your
       working directory.)  This is useful for updating directories that were
       created in the repository since the initial checkout; but it has an
       unfortunate side effect.  If you deliberately avoided certain direc-
       tories in the repository when you created your working directory
       (either through use of a module name or by listing explicitly the
       files and directories you wanted on the command line), then updating
       with -d will create those directories, which may not be what you want.



steve fischer wrote:
> 
> chetna-
> 
> 1) can you send me the lines that you commented, so i can fix the problem.
> 
> 2) the problem is that the tarball is excluding empty directories.  for
> now, create the following directories:
> 
> /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/SRes
> /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/Core
> /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/RAD3
> /home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/TESS
> 
> steve
> 
> Chetna Warade wrote:
> 
> >Hi Steve,
> >
> >1) I downloaded latest tars from cvsweb sanger and tried to "build GUS
> >install -append". I remember reading about the rollback segments some
> >weeks back but in my case I need to comment 3 lines from
> >$GUS_HOME/lib/perl/GUS/ObjRelP/ DbiDatabase.pm file.
> >
> >2)  But while building:
> >.....
> >     [copy] Copying 2 files to
> >/home/projects/GUS/Model/src/java/org/gusdb/model/DoTS
> >
> >BUILD FAILED
> >file:/home/projects/GUS/build.xml:123:
> >/home/projects/GUS/Model/src/java/org/gusdb/model/hand_edited/SRes not
> >found.
> >
> >Because SRes is not there? Any idea I downloaded from cvsweb sanger today
> >morning.
> >
> >Thanks for the help
> >Chetna
> >
> >
> >
> >>ok, i see how i confused you.  what i described works for folks that are
> >>using the cvs repository directly.
> >>
> >>in your case, instead, you should just get the new .tar files for GUS
> >>and install from
> >>
> >> http://cvsweb.sanger.ac.uk/cgi-bin/cvsweb.cgi/GUS/GUS.tar.gz?cvsroot=GUS&f=h&tarball=1
> >>and from
> >>
> >> http://cvsweb.sanger.ac.uk/cgi-bin/cvsweb.cgi/install/install.tar.gz?cvsroot=GUS&f=h&tarball=1
> >>
> >>hopefully, that will fix your problem.  otherwise, let me know.
> >>
> >>steve
> >>
> >>Chetna Warade wrote:
> >>
> >>
> >>
> >>>Hi,
> >>>
> >>>Thanks for the mail,
> >>>
> >>>1) I am little confused here about the rehash and updateAllProjects
> >>>command.
> >>>Where does these two commands/plugins/scripts live. I mean are they
> >>>located in $GUS_HOME/bin directory..
> >>>
> >>>Also currently I haven't added the cvs on the $PROJECT/install and
> >>>$PROJECT/GUS directories but in other repository to keep track of
> >>>downloads at my side. So do you recommend putting it in $PROJECT install
> >>>and GUS directories.
> >>>
> >>>2) I am still getting this:
> >>>
> >>>[chetna@mango chetna]$ ga +meta --commit
> >>>Can't locate object method "userError" via package "GUS::Plugin
> >>>on" (perhaps you forgot to load "GUS::PluginMgr::GusApplication
> >>>home/lib/perl/GUS/PluginMgr/GusApplication.pm line 44.
> >>>[chetna@mango chetna]$
> >>>
> >>>Hope to hear from you
> >>>Chetna
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>>$PROJECT_HOME contains the projects:  GUS, install, CBIL, etc.  GUS and
> >>>>install have CVS/ dirs, but CBIL doesn't because it is from the download
> >>>>site.
> >>>>
> >>>>steve
> >>>>
> >>>>Chetna Warade wrote:
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>>Hi,
> >>>>>
> >>>>>I tried:
> >>>>>[chetna@mango chetna]$ ga +meta --commit
> >>>>>Can't locate object method "userError" via package
> >>>>>"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
> >>>>>"GUS::PluginMgr::GusApplication"?) at
> >>>>>/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 44.
> >>>>>[chetna@mango chetna]$
> >>>>>
> >>>>>Also to run cvs update do you expect a cvs system on the $PROJECT_HOME and
> >>>>>$GUS_HOME directories.
> >>>>>
> >>>>>I will send a test mail on the gusdev-gusdev-list,
> >>>>>
> >>>>>Thanks,
> >>>>>Chetna
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>>i don't think there are any resitrictions on who can write to the
> >>>>>>mailing list.  what address are you trying, and what happens?
> >>>>>>
> >>>>>>as far as ga is concerned, first, the command is ga +meta --commit (not
> >>>>>>--create).
> >>>>>>
> >>>>>>also, i think you should just make sure you have the latest.
> >>>>>>
> >>>>>>do this:
> >>>>>>1. get the latest CBIL download from:
> >>>>>>http://www.cbil.upenn.edu/downloads/CBIL/releases/CBIL_v1-2-0.tar.gz
> >>>>>>2. cd $PROJECT_HOME/install
> >>>>>>     cvs update
> >>>>>>     rehash
> >>>>>>     updateAllProjects
> >>>>>>
> >>>>>>steve
> >>>>>>
> >>>>>>Chetna Warade wrote:
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>>Hi,
> >>>>>>>
> >>>>>>>I am trying to mail to the mailing list and I am unable to do so. I am
> >>>>>>>wondering if I have enough permissions on the mail list.
> >>>>>>>
> >>>>>>>I am tyring to run:
> >>>>>>>
> >>>>>>>[chetna@mango chetna]$ ga +meta --create
> >>>>>>>Can't locate object method "userError" via package
> >>>>>>>"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
> >>>>>>>"GUS::PluginMgr::GusApplication"?) at
> >>>>>>>/home/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 44.
> >>>>>>>[chetna@mango chetna]$
> >>>>>>>
> >>>>>>>It would be great if you could help me debug this.
> >>>>>>>Thanks
> >>>>>>>Chetna
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>
> >>>
> >>>
> >>>
> >>
> >>
> >
> >
> >
> >
> 
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