[Gusdev-gusdev] plugin inventory

[Keith J. <kd...@sa...>]

Hi,

I'm looking into the inventory of Perl module plugins which we could
possibly need to perform our standard analyses on data housed in
GUS. I've jotted down a list below. For the purposes of planning at
our end, I'd be interested in knowing if any of these either exist or
are planned.

blast (I know this exists)
blat
fasta
repeatmasker
seg
reputer
glimmer(m)
phat
geneid
hmmgene
genewise/estwise etc.
tRNAscan-SE
infernal
emboss programs (any)
hmmer/hmmpfam
FingerPRINTScan
pfscan
tmhmm
signalp
clustal
DNA block aligner
TCoffee

thanks,

Keith

-- 

- Keith James <kd...@sa...> bioinformatics programming support -
- Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK -