Re: [Gusdev-gusdev] LoadTaxon.pm

[steve f. <sfi...@pc...>]

just want to clarify why debbie "committed when i should not have".

the deal is that we are extremely rigorous about our tracking of bulk 
changes to the db.

in particular, you cannot run a plugin with --commit unless that exact 
revision of the plugin has been registered in the db.  and, you cannot 
do that registering unless you have checked in that version of the 
plugin to cvs.

instead of checking in a crippled version of a plugin, hacks like this 
can be accomplished by other ways, such as:
  - introducing a temporary command line arg which the plugin tests for 
to run its hacky code.  
  - copying the plugin to a new file, such as LoadTaxonDebbiesHack.pm, 
and registering it as a new plugin

steve

Deborah F. Pinney wrote:

>This is my fault. I commited to cvs when I should not have. I have
>uncommented those lines and recomitted to cvs.
>
>
>                                                Deboeah Pinney
>
>
>On Wed, 5 Mar 2003, Arnaud
>Kerhornou wrote:
>
>  
>
>>Hi
>>
>>I'm trying to run LoadTaxon plugin. Why some lines are commented out ?
>>
>>    #my $genCodes = $self->makeGeneticCode();
>>
>>    my $namesDmp = $self->getNames();
>>
>>    #my $nodesHash = $self->makeNodesHash($genCodes);
>>
>>    #my $rootAttArray = $self->getRootAttArray($genCodes);
>>
>>    #$self->makeTaxonEntry($rootAttArray, \$count);
>>
>>    #if ($self->getCla->{'restart'} && $self->getCla->{'restart'} > 1) {
>>	#$self->getTaxonAtt($self->getCla->{'restart'},$nodesHash,\$count);
>>    #}
>>    #else {
>>	#$self->getTaxonAtt($rootAttArray->[0],$nodesHash,\$count);
>>    #}
>>
>>Arnaud
>>
>>
>>
>>
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>
>
>
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>and Linux platforms. Try it free. www.etnus.com
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