Re: [Gusdev-gusdev] Re: plugin

[steve f. <sfi...@pc...>]

paul-

do a cvs update of $PROJECT_HOME/GUS

i have finalized the upgrading of the plugin api to improve exception 
handling and logging, and some other minor cleanup.

these methods will be defined now.

the completion of the api was the first step towards the big project of 
documenting how to write plugins, which i will now start on.

steve

pjm wrote:

>Hi Steve,
>
>At line 353 of GusApplication.pm (in CVS anyway) the call to
>'$M->initArgs($cla);' doesn't work because the subroutine hasn't been defined
>anywhere for it;
>
>pcs2b[pjm]96: ga GUS::Common::Plugin::LoadPfam
>Can't locate object method "initArgs" via package
>"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
>"GUS::PluginMgr::GusApplication"?) at
>/nfs/team81/pjm/GUS/lib/perl/GUS/PluginMgr/GusApplication.pm line 353.
>
>Anyhow, I commented on the offending line to see if I could move on but found
>the subroutine getArgs() isn't defined anywhere;
>
>pcs2b[pjm]100: ga GUS::Common::Plugin::LoadPfam
>Can't locate object method "getArgs" via package
>"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
>"GUS::PluginMgr::GusApplication"?) at
>/nfs/team81/pjm/GUS/lib/perl/GUS/PluginMgr/GusApplication.pm line 244.
>
>Does some code need to be commited to cvs?
>
>Paul.
>
>steve fischer wrote:
>  
>
>>yes, jonathan, you should add these to the db create process, and you
>>sanger guys should add em to your db for now.
>>
>>the values we have so far are:
>>
>>id
>>date
>>float
>>int
>>string
>>boolean
>>table_id
>>
>>steve
>>
>>Jonathan Crabtree wrote:
>>
>>    
>>
>>>Arnaud-
>>>
>>>On Mon, 24 Feb 2003, Arnaud Kerhornou wrote:
>>>
>>>
>>>      
>>>
>>>>>when doing a `ga +create GUS::Common::Plugin::LoadPfam --commit`
>>>>>it complained because my plugin did not match anything from
>>>>>AlgorithmParamKeyType table. This was because it ws empty.
>>>>>
>>>>>
>>>>>          
>>>>>
>>>>I think I deleted them, sorry!! Can anyone confirm that they are
>>>>generated during the build process ?
>>>>
>>>>
>>>>        
>>>>
>>>They're definitely not included in the create database scripts, which is
>>>where they probably belong (or at least it's one option.)  I don't believe
>>>that either the build process or the 'ga +meta' command creates them
>>>either, but I'm not sure about that; Steve or Jonathan S. should know.
>>>
>>>Jonathan
>>>
>>>
>>>
>>>
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>
>
>  
>