Re: [Gusdev-gusdev] Re: plugin

[pjm <pj...@sa...>]

Hi Steve,

At line 353 of GusApplication.pm (in CVS anyway) the call to
'$M->initArgs($cla);' doesn't work because the subroutine hasn't been defined
anywhere for it;

pcs2b[pjm]96: ga GUS::Common::Plugin::LoadPfam
Can't locate object method "initArgs" via package
"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
"GUS::PluginMgr::GusApplication"?) at
/nfs/team81/pjm/GUS/lib/perl/GUS/PluginMgr/GusApplication.pm line 353.

Anyhow, I commented on the offending line to see if I could move on but found
the subroutine getArgs() isn't defined anywhere;

pcs2b[pjm]100: ga GUS::Common::Plugin::LoadPfam
Can't locate object method "getArgs" via package
"GUS::PluginMgr::GusApplication" (perhaps you forgot to load
"GUS::PluginMgr::GusApplication"?) at
/nfs/team81/pjm/GUS/lib/perl/GUS/PluginMgr/GusApplication.pm line 244.

Does some code need to be commited to cvs?

Paul.

steve fischer wrote:
> 
> yes, jonathan, you should add these to the db create process, and you
> sanger guys should add em to your db for now.
> 
> the values we have so far are:
> 
> id
> date
> float
> int
> string
> boolean
> table_id
> 
> steve
> 
> Jonathan Crabtree wrote:
> 
> >Arnaud-
> >
> >On Mon, 24 Feb 2003, Arnaud Kerhornou wrote:
> >
> >
> >>>when doing a `ga +create GUS::Common::Plugin::LoadPfam --commit`
> >>>it complained because my plugin did not match anything from
> >>>AlgorithmParamKeyType table. This was because it ws empty.
> >>>
> >>>
> >>I think I deleted them, sorry!! Can anyone confirm that they are
> >>generated during the build process ?
> >>
> >>
> >
> >They're definitely not included in the create database scripts, which is
> >where they probably belong (or at least it's one option.)  I don't believe
> >that either the build process or the 'ga +meta' command creates them
> >either, but I'm not sure about that; Steve or Jonathan S. should know.
> >
> >Jonathan
> >
> >
> >
> >
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