Re: [Gusdev-gusdev] Mutagen and PhenotypeClass CVs - XML format

[Joan M. <ma...@pc...>]

Hi Arnaud,

The XML for mutagen looks fine.

I am wondering about the phenotypeClass and Phenotype terms, and if there
won't be some overlap between the two.

Joan


Arnaud Kerhornou wrote:

> Hi
>
> I've attached the xml files for two controlled vocabulary tables :
>  * Mutagen,
>  * PhenotypeClass.
>
> They're both from Flybase.
> Re. PhenotypeClass I've just selected a minimal set from the Flybase
> one. It covers actually two different things :
>  * inheritance description: recessive, dominant, codominant,
> semidominant. only one term per allele
>
>  * Effects : wild-type, lethal, viable etc. zero, one or more term per
> allele
> This set will probably need to be extended specifically for each organism.
>
> Let me know if they are fine with you.
>
> cheers
> Arnaud
>
>   ------------------------------------------------------------------------
>                   Name: Mutagen.xml
>    Mutagen.xml    Type: XML Document (text/xml)
>               Encoding: 7bit
>
>                          Name: PhenotypeClass.xml
>    PhenotypeClass.xml    Type: XML Document (text/xml)
>                      Encoding: 7bit

--
Joan Mazzarelli
Computational Biology and Informatics Laboratory
Center for Bioinformatics
1429 Blockley Hall
University of Pennsylvania
Philadelphia, PA 19104