Re: [Gusdev-rad-issues] question on arrayresultloader plugin

[Junmin L. <ju...@pc...>]

Hi, Sucheta,

> I am using arrayresultloader to upload the array data into GUS. It does a 
> decent job but crashes inbetween without giving a proper error message. Could 
> it be due to my computer related issues.

That could be due to the memory size in your machine.

>
> Also when I have a line having data such as:
>
> x_position, y_position, mean,       stdv,       npixels,       name, 
> detection,      detection_p_value,    signal
> 621            275           76.0           10.5       25 
> PsAffx.C17000127_at   A                 0.111572                  10.95974
>
> But when I upload the data it changes the fields into:
>
> Debug   621    275    44.0    7.5    25    PsAffx.C17000127_at       A 0.24
> 6094      10.821429

Can you tell me "which fields" they are?


> and says mean 44.0 and stdv 7.5 etc.
>

I don't understand the above setence. Could you explain?

Also when you report the bugs or issues of the plugin, please provide the 
following information:
1. the complete ga command you run.
2. the portion of the data file your run with, e.g., the first 100 lines.
3. the output message from the plugin.
4. what happend when you run the plugin in "non-commit" model
5. what happend when you using the "--testnumber" option of the plugin.

That will help me to solve your issues. And I will suggest you always run 
the plugin with the above point 4 and 5 first to test it against your data 
file.

--junmin