[Gusdev-rad-issues] important correction Re: RAD schema

[Elisabetta M. <man...@pc...>]

Sorry,
**important correction** regarding sample cfg files. Ignore my the 
second to last comment on the CBIL RAD cvs for config files in my 
previous email. The CBIL RAD repository will be made indeed public and 
will contain other useful things, like the latest StudyAnnotator code, 
etc.
But the sample cfg files are stored at **the Sanger GUS cvs** in the 
repository GUS/RAD/config and *already available* (there are config files 
in the CBIL RAD repository I cited below, but those are old and should 
not be used.) Again, the documentation of each plugin should point to the 
location of its sample config file *within the Sanger GUS cvs repository*.
Sorry for the confusion on this point, I got mixed up on our various cvs 
repositories...

Elisabetta

---

On Mon, 8 Nov 2004, Elisabetta Manduchi wrote:

>
> Hi Sucheta,
> first a reminder, also for the benefit of others in the cc of this email, 
> that general information on the RAD pipeline and on how to set RAD up is at 
> http://www.cbil.upenn.edu/RAD/php/RAD-installation.php?
> In terms of the RAD schema, I'm not sure of exactly what you are looking 
> for. RAD is part of GUS, so you if you install the GUS schema (instructions 
> at http://www.gusdb.org/documentation.html) you'll have the RAD schema as 
> well. I believe that the plans are to make available the next release of 
> the schema (3.5?) in the next few weeks.
> The documentation for the RAD schema is contained in that of the GUS schema 
> at http://www.gusdb.org/cgi-bin/schemaBrowser.
> All RAD plugins are available from the Sanger CVS and documentation can 
> also be viewed at: http://www.gusdb.org/documentation/plugins.
> In terms of sample files, configuration sample files for most of the 
> plugins are currently stored in the CBIL RAD cvs repository. This 
> repository will be made public (read-only) very shortly, possibly even 
> tomorrow, and will be added to the repositories currently viewable at
> http://cvs.cbil.upenn.edu. So, if you check back at this website in a few 
> days you should see our RAD repository. All available sample files (mostly 
> samples of cfg files) are in the directory /DataLoad/config/ of this 
> repository and the name of the relevant cfg sample file for each plugin is 
> are specified in the plugin's documentation.
> We don't currently store sample data files in cvs, but the format is 
> typically explained in the plugin doc and if you need any further 
> clarification feel free to contact us with the specifics of the plugin you 
> are interested in and we can provide additional info and examples.
> Hope this helps,
> Elisabetta
>
> ---
>
> On Mon, 8 Nov 2004, Sucheta Tripathy wrote:
>
>> Hi Elisabetta,
>> 
>> How are you? It was nice visiting you all at CBIL.
>> 
>> I have one group here working on a pipeline to upload data to the RAD 
>> module. For that I was wondering if you can point us a place, where we 
>> get the RAD schema and also sample data files for all the plugins for 
>> RAD.
>> 
>> That will be a great help.
>> 
>> Thanks in advance.
>> 
>> Have a great day.
>> 
>> Sucheta
>> 
>> 
>> At 11:47 AM 9/15/2003 -0400, Elisabetta Manduchi wrote:
>> 
>>> I've cvs committed a change to GUS/PluginMgr/lib/perl/Plugin.pm, 
>>> suggested
>>> by Steve, to fix a problem occurring when registering a new plugin 
>>> written
>>> using the most recent documentation features.
>>> Elisabetta
>>> 
>>> 
>>> 
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>> 
>