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Re: [GUSDEV] GUS install problem with Postgres and Mac OSX
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From: Nicolas J. <nic...@gm...> - 2012-03-23 03:20:50
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Hi Mark,
Thanks: indeed, I made the mistake of adjusting the PATH with $GUS_HOME/bin
etc. before actually exporting GUS_HOME.
I've rerun the build GUS install -append and it now has a new error:
perlGeneratedModel:
[echo] generating Perl Objects
[exec] GUS::ObjRelP::DbiDbHandle connect('varDB_2012','postgres',...)
failed: missing "=" after "varDB_2012" in connection info string at
/Users/Nicolas/GUS/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 173
[exec] Can't bless non-reference value at
/Users/Nicolas/GUS/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 21.
BUILD FAILED
/Users/Nicolas/GUS/project_home/install/build.xml:38: The following error
occurred while executing this line:
/Users/Nicolas/GUS/project_home/GUS/build.xml:258: exec returned: 255
Thanks again for your help!
Best regards,
Nicolas
Full output:
Nicolas-work-iMac:bin Nicolas$ ./build GUS install -append
Buildfile: /Users/Nicolas/GUS/project_home/install/build.xml
install:
[echo] proj=GUS
[echo] comp=
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/Bio
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/CSP
defaultJavaCompile:
[javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
to false for repeatable builds
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/Util
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/Cider
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/HQ
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/TranscriptExpression
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing CBIL/ObjectMapper
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GUS/Supported
defaultJavaCompile:
[javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
to false for repeatable builds
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GUS/Community
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GUS/DBAdmin
defaultJavaCompile:
[javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
to false for repeatable builds
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GUS/GOPredict
defaultJavaCompile:
[javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
to false for repeatable builds
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GusSchema/Definition
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GUS/DBAdmin
defaultJavaCompile:
[javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: warning:
'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
to false for repeatable builds
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
defaultComponentInstall:
[echo] .
[echo] Installing GUS/ObjRelP
recordBuildState:
[propertyfile] Updating property file: /Users/Nicolas/GUS/gus_home/config/.
build.info
perlGeneratedModel:
[echo] generating Perl Objects
[exec] GUS::ObjRelP::DbiDbHandle connect('varDB_2012','postgres',...)
failed: missing "=" after "varDB_2012" in connection info string at
/Users/Nicolas/GUS/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm line 173
[exec] Can't bless non-reference value at
/Users/Nicolas/GUS/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 21.
BUILD FAILED
/Users/Nicolas/GUS/project_home/install/build.xml:38: The following error
occurred while executing this line:
/Users/Nicolas/GUS/project_home/GUS/build.xml:258: exec returned: 255
Total time: 20 seconds
On Fri, Mar 23, 2012 at 12:00, Mark Heiges <mh...@ug...> wrote:
> The includeantruntime warning is an ant 1.8 "feature". I'm pretty sure you
> can ignore that warning in this case, I don't see any abnormal
> repercussions from it, but we've not used that version of ant ourselves.
> You can google that warning for more information if you're curious.
>
> The generateGusObjects error makes me suspect that your PATH doesn't
> include $GUS_HOME/bin . You'll want something like
> export PATH=$GUS_HOME/bin:$PROJECT_HOME/install/bin:$PATH
>
> At this point the schema is installed in your database (log in with a
> client and confirm). So the next time run "build GUS install -append"
> (without the -installDBSchema) and it should resume with the "generating
> Perl Objects".
>
>
> On Mar 22, 2012, at 9:59 PM, Nicolas Joannin wrote:
>
> > Hi Mark,
> >
> > I got the code from the subversion repository, but that was a couple
> weeks ago, I think.
> > I've just tried with the latest svn update.
> >
> > I started all from scratch: I deleted the GUS folder I was working in
> and replaced it with the new.
> > I run the install a first time and encountered the same ojdbc5.jar
> problem.
> >
> > So I added that file to the proper directory and rerun the install.
> >
> > This time I get different errors (see full output below):
> >
> > defaultJavaCompile:
> > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> >
> > [InstallSchema] ERROR [main] (InstallSchemaTask.java:122) - Null
> version, skipping. Note: You will need to manually add a version number
> to the DB
> >
> > BUILD FAILED
> > /Users/Nicolas/GUS/project_home/install/build.xml:38: The following
> error occurred while executing this line:
> > /Users/Nicolas/GUS/project_home/GUS/build.xml:258: Execute failed:
> java.io.IOException: Cannot run program "generateGusObjects" (in directory
> "/Users/Nicolas/GUS/project_home/install"): error=2, No such file or
> directory
> >
> > The first one (with the "warning: 'includeantruntime'") occurs several
> times.
> >
> > Thanks for the quick responses!
> > Best regards,
> > Nicolas
> >
> >
> > Here's the full output:
> >
> > Nicolas-work-iMac:bin Nicolas$ ./build GUS install -append
> -installDBSchema
> > Buildfile: /Users/Nicolas/GUS/project_home/install/build.xml
> >
> > install:
> > [echo] proj=GUS
> > [echo] comp=
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/Bio
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/CSP
> >
> > defaultJavaCompile:
> > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/Util
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/Cider
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/HQ
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/TranscriptExpression
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing CBIL/ObjectMapper
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GUS/Supported
> >
> > defaultJavaCompile:
> > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GUS/Community
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GUS/DBAdmin
> >
> > defaultJavaCompile:
> > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GUS/GOPredict
> >
> > defaultJavaCompile:
> > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GusSchema/Definition
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GUS/DBAdmin
> >
> > defaultJavaCompile:
> > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > InstallSchema:
> > [InstallSchema] INFO [main] (InstallSchemaTask.java:79) - Reading
> database from
> /Users/Nicolas/GUS/project_home/GusSchema/Definition/config/gus_schema.xml
> > [InstallSchema] INFO [main] (SchemaReader.java:48) - Reading Database
> > [InstallSchema] INFO [main] (Database.java:161) - Resolving Database
> References
> > [InstallSchema] INFO [main] (DatabaseValidator.java:57) - Validating
> Database: 'null'
> > [InstallSchema] INFO [main] (InstallSchemaTask.java:87) - Overriding
> individual tablespace specifications with value "GUS" from property file
> > [InstallSchema] INFO [main] (DatabaseValidator.java:57) - Validating
> Database: 'null'
> > [InstallSchema] INFO [main] (SchemaWriter.java:33) - Writing Database
> > [InstallSchema] INFO [main] (DatabaseValidator.java:57) - Validating
> Database: 'null'
> > [InstallSchema] INFO [main] (SchemaWriter.java:33) - Writing Database
> > [InstallSchema] ERROR [main] (InstallSchemaTask.java:122) - Null
> version, skipping. Note: You will need to manually add a version number
> to the DB
> > [InstallSchema] ERROR [main] (InstallSchemaTask.java:122) - Null
> version, skipping. Note: You will need to manually add a version number
> to the DB
> >
> > defaultComponentInstall:
> > [echo] .
> > [echo] Installing GUS/ObjRelP
> >
> > componentPartCopySub:
> > [copy] Copying 3 files to /Users/Nicolas/GUS/gus_home/bin
> >
> > componentPartCopySub:
> > [mkdir] Created dir: /Users/Nicolas/GUS/gus_home/lib/perl/GUS/ObjRelP
> > [copy] Copying 18 files to
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/ObjRelP
> >
> > componentPartCopySub:
> > [mkdir] Created dir: /Users/Nicolas/GUS/gus_home/doc/GUS/ObjRelP
> > [copy] Copying 3 files to
> /Users/Nicolas/GUS/gus_home/doc/GUS/ObjRelP
> >
> > recordBuildState:
> > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> >
> > perlGeneratedModel:
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/Core
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/DoTS
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/RAD
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/SRes
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/TESS
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/PROT
> > [mkdir] Created dir:
> /Users/Nicolas/GUS/gus_home/lib/perl/GUS/Model/Study
> > [echo] generating Perl Objects
> >
> > BUILD FAILED
> > /Users/Nicolas/GUS/project_home/install/build.xml:38: The following
> error occurred while executing this line:
> > /Users/Nicolas/GUS/project_home/GUS/build.xml:258: Execute failed:
> java.io.IOException: Cannot run program "generateGusObjects" (in directory
> "/Users/Nicolas/GUS/project_home/install"): error=2, No such file or
> directory
> > at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
> > at java.lang.Runtime.exec(Runtime.java:593)
> > at
> org.apache.tools.ant.taskdefs.Execute$Java13CommandLauncher.exec(Execute.java:862)
> > at org.apache.tools.ant.taskdefs.Execute.launch(Execute.java:481)
> > at org.apache.tools.ant.taskdefs.Execute.execute(Execute.java:495)
> > at
> org.apache.tools.ant.taskdefs.ExecTask.runExecute(ExecTask.java:631)
> > at
> org.apache.tools.ant.taskdefs.ExecTask.runExec(ExecTask.java:672)
> > at
> org.apache.tools.ant.taskdefs.ExecTask.execute(ExecTask.java:498)
> > at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
> > at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
> > at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> > at java.lang.reflect.Method.invoke(Method.java:597)
> > at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
> > at org.apache.tools.ant.Task.perform(Task.java:348)
> > at org.apache.tools.ant.Target.execute(Target.java:392)
> > at org.apache.tools.ant.Target.performTasks(Target.java:413)
> > at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
> > at
> org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38)
> > at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
> > at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442)
> > at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
> > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> > at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> > at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> > at java.lang.reflect.Method.invoke(Method.java:597)
> > at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
> > at org.apache.tools.ant.Task.perform(Task.java:348)
> > at org.apache.tools.ant.Target.execute(Target.java:392)
> > at org.apache.tools.ant.Target.performTasks(Target.java:413)
> > at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
> > at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
> > at
> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
> > at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
> > at org.apache.tools.ant.Main.runBuild(Main.java:811)
> > at org.apache.tools.ant.Main.startAnt(Main.java:217)
> > at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
> > at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
> > Caused by: java.io.IOException: error=2, No such file or directory
> > at java.lang.UNIXProcess.forkAndExec(Native Method)
> > at java.lang.UNIXProcess.<init>(UNIXProcess.java:53)
> > at java.lang.ProcessImpl.start(ProcessImpl.java:91)
> > at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
> > ... 36 more
> >
> > Total time: 30 seconds
> >
> >
> >
> > On Fri, Mar 23, 2012 at 10:37, Mark Heiges <mh...@ug...> wrote:
> > Hi Nicolas, Are you using code from the gus subversion repository? If
> so, do an svn update. This bug was fixed this morning. If not from
> subversion, where did you get your code?
> >
> > -Mark
> >
> > On Mar 22, 2012, at 9:24 PM, Nicolas Joannin wrote:
> >
> > > Good morning Mark, Rodrigo and John,
> > >
> > > Indeed, the ojdbc5.jar file helped to get further ahead :)
> > > Unfortunately, there are still some errors (see below).
> > >
> > > Best regards,
> > > Nicolas
> > >
> > >
> > >
> > > Nicolas-work-iMac:bin Nicolas$ ./build GUS install -append
> -installDBSchema
> > > Buildfile: /Users/Nicolas/GUS/project_home/install/build.xml
> > >
> > > install:
> > > [echo] proj=GUS
> > > [echo] comp=
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/Bio
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/CSP
> > >
> > > defaultJavaCompile:
> > > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/Util
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/Cider
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/HQ
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/TranscriptExpression
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing CBIL/ObjectMapper
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing GUS/Supported
> > >
> > > defaultJavaCompile:
> > > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing GUS/Community
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing GUS/DBAdmin
> > >
> > > defaultJavaCompile:
> > > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing GUS/GOPredict
> > >
> > > defaultJavaCompile:
> > > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing GusSchema/Definition
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > defaultComponentInstall:
> > > [echo] .
> > > [echo] Installing GUS/DBAdmin
> > >
> > > defaultJavaCompile:
> > > [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332:
> warning: 'includeantruntime' was not set, defaulting to
> build.sysclasspath=last; set to false for repeatable builds
> > >
> > > recordBuildState:
> > > [propertyfile] Updating property file:
> /Users/Nicolas/GUS/gus_home/config/.build.info
> > >
> > > InstallSchema:
> > > [InstallSchema] INFO [main] (InstallSchemaTask.java:79) - Reading
> database from
> /Users/Nicolas/GUS/project_home/GusSchema/Definition/config/gus_schema.xml
> > > [InstallSchema] INFO [main] (SchemaReader.java:48) - Reading Database
> > > [InstallSchema] INFO [main] (Database.java:161) - Resolving Database
> References
> > > [InstallSchema] INFO [main] (DatabaseValidator.java:57) - Validating
> Database: 'null'
> > > [InstallSchema] INFO [main] (InstallSchemaTask.java:87) - Overriding
> individual tablespace specifications with value "GUS" from property file
> > > [InstallSchema] INFO [main] (DatabaseValidator.java:57) - Validating
> Database: 'null'
> > > [InstallSchema] INFO [main] (SchemaWriter.java:33) - Writing Database
> > > [InstallSchema] INFO [main] (DatabaseValidator.java:57) - Validating
> Database: 'null'
> > > [InstallSchema] INFO [main] (SchemaWriter.java:33) - Writing Database
> > >
> > > BUILD FAILED
> > > /Users/Nicolas/GUS/project_home/install/build.xml:38: The following
> error occurred while executing this line:
> > > /Users/Nicolas/GUS/project_home/GUS/build.xml:16: The following error
> occurred while executing this line:
> > > /Users/Nicolas/GUS/project_home/GusSchema/build.xml:63:
> java.io.IOException: Error executing SQL: '
> > >
> > > CREATE TABLE Core.AlgorithmInvocation (
> > > ALGORITHM_INVOCATION_ID NUMERIC(12,0) NOT NULL,
> > > ALGORITHM_IMPLEMENTATION_ID NUMERIC(5,0) NOT NULL,
> > > START_TIME TIMESTAMP NOT NULL,
> > > END_TIME TIMESTAMP NOT NULL,
> > > CPUS_USED NUMERIC(5,0) ,
> > > CPU_TIME FLOAT(126) ,
> > > RESULT VARCHAR(350) NOT NULL,
> > > COMMENT_STRING VARCHAR(255) ,
> > > MODIFICATION_DATE TIMESTAMP NOT NULL,
> > > USER_READ NUMERIC(1,0) NOT NULL,
> > > USER_WRITE NUMERIC(1,0) NOT NULL,
> > > GROUP_READ NUMERIC(1,0) NOT NULL,
> > > GROUP_WRITE NUMERIC(1,0) NOT NULL,
> > > OTHER_READ NUMERIC(1,0) NOT NULL,
> > > OTHER_WRITE NUMERIC(1,0) NOT NULL,
> > > ROW_USER_ID NUMERIC(12,0) NOT NULL,
> > > ROW_GROUP_ID NUMERIC(4,0) NOT NULL,
> > > ROW_PROJECT_ID NUMERIC(4,0) NOT NULL,
> > > ROW_ALG_INVOCATION_ID NUMERIC(12,0) NOT NULL)' Error: ERROR:
> precision for type float must be less than 54 bits
> > > at
> org.gusdb.dbadmin.util.JDBCStreamWriter.flush(JDBCStreamWriter.java:57)
> > > at
> org.gusdb.dbadmin.writer.RelationalDatabaseWriter.writeTable(RelationalDatabaseWriter.java:67)
> > > at
> org.gusdb.dbadmin.writer.RelationalDatabaseWriter.writeTables(RelationalDatabaseWriter.java:43)
> > > at
> org.gusdb.dbadmin.writer.PostgresWriter.writeDatabase(PostgresWriter.java:68)
> > > at
> org.gusdb.dbadmin.writer.SchemaWriter.write(SchemaWriter.java:34)
> > > at
> org.gusdb.dbadmin.util.InstallSchemaTask.execute(InstallSchemaTask.java:99)
> > > at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
> > > at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
> > > at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> > > at java.lang.reflect.Method.invoke(Method.java:597)
> > > at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
> > > at org.apache.tools.ant.Task.perform(Task.java:348)
> > > at org.apache.tools.ant.Target.execute(Target.java:392)
> > > at org.apache.tools.ant.Target.performTasks(Target.java:413)
> > > at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
> > > at
> org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38)
> > > at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
> > > at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442)
> > > at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
> > > at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
> > > at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> > > at java.lang.reflect.Method.invoke(Method.java:597)
> > > at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
> > > at org.apache.tools.ant.Task.perform(Task.java:348)
> > > at org.apache.tools.ant.Target.execute(Target.java:392)
> > > at org.apache.tools.ant.Target.performTasks(Target.java:413)
> > > at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
> > > at
> org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38)
> > > at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
> > > at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442)
> > > at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
> > > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> > > at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> > > at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> > > at java.lang.reflect.Method.invoke(Method.java:597)
> > > at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
> > > at org.apache.tools.ant.Task.perform(Task.java:348)
> > > at org.apache.tools.ant.Target.execute(Target.java:392)
> > > at org.apache.tools.ant.Target.performTasks(Target.java:413)
> > > at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
> > > at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
> > > at
> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
> > > at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
> > > at org.apache.tools.ant.Main.runBuild(Main.java:811)
> > > at org.apache.tools.ant.Main.startAnt(Main.java:217)
> > > at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
> > > at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
> > >
> > > Total time: 20 seconds
> > >
> > >
> > > On Thu, Mar 22, 2012 at 23:23, Mark Heiges <mh...@ug...> wrote:
> > > I have confirmed that the ojdbc jar is required for the code to
> compile.
> > >
> > > -Mark
> > >
> > > On Mar 22, 2012, at 10:09 AM, John Iodice wrote:
> > >
> > > > Hi Nicolas,
> > > >
> > > > That dbVendor setting looks right; I think that your configuration
> is correct for a Postgres install (and that I was mistaken to think that
> the install is looking for oracle.jdbc.OracleDriver because it's configured
> to use Oracle).
> > > >
> > > > Looking in my own $GUS_HOME/lib/java/db_driver directory, I see that
> I have both Oracle and Postgres drivers, though I only use Oracle. Maybe
> both are required to compile the Java? These are the files I have there:
> > > >
> > > > $ ls $GUS_HOME/lib/java/db_driver/
> > > > ojdbc5.jar postgresql-8.3-603.jdbc3.jar
> > > >
> > > > I see that ojdbc5.jar does contain oracle/jdbc/OracleDriver.class. I
> suggest you try downloading that jarfile. You can get it from here:
> http://www.oracle.com/technetwork/database/enterprise-edition/jdbc-111060-084321.html
> > > >
> > > > -- John
> > > >
> >
> >
> >
>
>
>
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