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Re: [GUSDEV] GUS install problem with Postgres and Mac OSX
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From: Rodrigo J. <jar...@gm...> - 2012-03-22 13:09:24
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Hi John, follow: dbVendor=Postgres dbiDsn=dbi:Pg:dbname=<your_database_name>;host=<your_database_server_ip> jdbcDsn=jdbc:postgresql://<your_database_server_ip>/<your_database_name> # Login and Password to the RDBMS databaseLogin=<your_database_user_name> databasePassword=<your_database_password> Regards, 2012/3/22 Nicolas Joannin <nic...@gm...> > Hi John, > > I don't have access to my work machine at the moment, but I can tell you > for sure that the dbvendor is set to Postgres. > > I am rather new at working with databases, so my research into the problem > may be misguided... However, could it be linked to the version of the jdbc > driver? At this link <http://jdbc.postgresql.org/download.html>, they > seem to say that for JVM v1.6, one should use a jdbc4, whereas the GUS > install uses a jdbc3. The current MacOSX 10.6 uses JVM v1.6. > > Also, I wasn't quite sure what to put for the "jdbcDsn", so I ended up > using jdbcDsn=jdbc:postgresql:<database_name>. > (I chose that after reading this page<http://jdbc.postgresql.org/documentation/83/connect.html>and because the database is on the local machine.) > > Otherwise, please let me know if there is any other information that may > be useful. > Best regards, > Nicolas > > On Thu, Mar 22, 2012 at 21:20, John Iodice <io...@gm...> wrote: > >> Hi Nicolas, >> >> It seems odd that the install is looking for an Oracle driver when you're >> using Postgres. What's the value of the "dbVendor" property in your GUS >> config file? Is it set to "Postgres"? >> >> -- John >> >> On Thu, Mar 22, 2012 at 12:42 AM, Nicolas Joannin < >> nic...@gm...> wrote: >> >>> Hello, >>> >>> I'm trying to install GUS, but have encountered a problem I cannot >>> figure out. >>> I have looked at the mailing list archive, but haven't found anything >>> that helps. >>> >>> In the output I get from the terminal (see below), there is a warning >>> about 'includeantruntime' that comes back several times. Other then that, >>> it stops with '/Users/Nicolas/GUS/project_home/GusSchema/build.xml:63: >>> Unable to locate class'. >>> >>> I'm working with the following: >>> Mac OSX 10.6.8 fully updated >>> Perl v5.14.2 built for darwin-thread-multi-2level (with 1 registered >>> patch) >>> Ant version 1.8.3 >>> PostgreSQL 9.1.1 >>> >>> Let me know if you need more information. >>> >>> Thank you in advance for any help you can give me! >>> Best regards, >>> Nicolas >>> >>> >>> >>> >>> Here is the terminal output I got: >>> >>> Nicolas-work-iMac:bin Nicolas$ ./build GUS install -append >>> -installDBSchema >>> Buildfile: /Users/Nicolas/GUS/project_home/install/build.xml >>> >>> install: >>> [echo] proj=GUS >>> [echo] comp= >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/Bio >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/CSP >>> >>> defaultJavaCompile: >>> [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: >>> warning: 'includeantruntime' was not set, defaulting to >>> build.sysclasspath=last; set to false for repeatable builds >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/Util >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/Cider >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/HQ >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/TranscriptExpression >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing CBIL/ObjectMapper >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing GUS/Supported >>> >>> defaultJavaCompile: >>> [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: >>> warning: 'includeantruntime' was not set, defaulting to >>> build.sysclasspath=last; set to false for repeatable builds >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing GUS/Community >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing GUS/DBAdmin >>> >>> defaultJavaCompile: >>> [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: >>> warning: 'includeantruntime' was not set, defaulting to >>> build.sysclasspath=last; set to false for repeatable builds >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing GUS/GOPredict >>> >>> defaultJavaCompile: >>> [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: >>> warning: 'includeantruntime' was not set, defaulting to >>> build.sysclasspath=last; set to false for repeatable builds >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing GusSchema/Definition >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> defaultComponentInstall: >>> [echo] . >>> [echo] Installing GUS/DBAdmin >>> >>> defaultJavaCompile: >>> [javac] /Users/Nicolas/GUS/project_home/install/build.xml:332: >>> warning: 'includeantruntime' was not set, defaulting to >>> build.sysclasspath=last; set to false for repeatable builds >>> >>> recordBuildState: >>> [propertyfile] Updating property file: >>> /Users/Nicolas/GUS/gus_home/config/.build.info >>> >>> InstallSchema: >>> [InstallSchema] FATAL [main] (InstallSchemaTask.java:170) - Unable to >>> locate class >>> [InstallSchema] java.lang.ClassNotFoundException: >>> oracle.jdbc.OracleDriver >>> [InstallSchema] at >>> org.apache.tools.ant.AntClassLoader.findClassInComponents(AntClassLoader.java:1365) >>> [InstallSchema] at >>> org.apache.tools.ant.AntClassLoader.findClass(AntClassLoader.java:1315) >>> [InstallSchema] at >>> org.apache.tools.ant.AntClassLoader.loadClass(AntClassLoader.java:1068) >>> [InstallSchema] at >>> java.lang.ClassLoader.loadClass(ClassLoader.java:247) >>> [InstallSchema] at java.lang.Class.forName0(Native Method) >>> [InstallSchema] at java.lang.Class.forName(Class.java:169) >>> [InstallSchema] at >>> org.gusdb.dbadmin.util.InstallSchemaTask.initialize(InstallSchemaTask.java:167) >>> [InstallSchema] at >>> org.gusdb.dbadmin.util.InstallSchemaTask.execute(InstallSchemaTask.java:62) >>> [InstallSchema] at >>> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291) >>> [InstallSchema] at >>> sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) >>> [InstallSchema] at >>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >>> [InstallSchema] at java.lang.reflect.Method.invoke(Method.java:597) >>> [InstallSchema] at >>> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) >>> [InstallSchema] at org.apache.tools.ant.Task.perform(Task.java:348) >>> [InstallSchema] at org.apache.tools.ant.Target.execute(Target.java:392) >>> [InstallSchema] at >>> org.apache.tools.ant.Target.performTasks(Target.java:413) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399) >>> [InstallSchema] at >>> org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeTargets(Project.java:1251) >>> [InstallSchema] at >>> org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442) >>> [InstallSchema] at >>> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291) >>> [InstallSchema] at >>> sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) >>> [InstallSchema] at >>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >>> [InstallSchema] at java.lang.reflect.Method.invoke(Method.java:597) >>> [InstallSchema] at >>> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) >>> [InstallSchema] at org.apache.tools.ant.Task.perform(Task.java:348) >>> [InstallSchema] at org.apache.tools.ant.Target.execute(Target.java:392) >>> [InstallSchema] at >>> org.apache.tools.ant.Target.performTasks(Target.java:413) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399) >>> [InstallSchema] at >>> org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:38) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeTargets(Project.java:1251) >>> [InstallSchema] at >>> org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:442) >>> [InstallSchema] at >>> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291) >>> [InstallSchema] at >>> sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >>> [InstallSchema] at >>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) >>> [InstallSchema] at >>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >>> [InstallSchema] at java.lang.reflect.Method.invoke(Method.java:597) >>> [InstallSchema] at >>> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) >>> [InstallSchema] at org.apache.tools.ant.Task.perform(Task.java:348) >>> [InstallSchema] at org.apache.tools.ant.Target.execute(Target.java:392) >>> [InstallSchema] at >>> org.apache.tools.ant.Target.performTasks(Target.java:413) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeTarget(Project.java:1368) >>> [InstallSchema] at >>> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41) >>> [InstallSchema] at >>> org.apache.tools.ant.Project.executeTargets(Project.java:1251) >>> [InstallSchema] at org.apache.tools.ant.Main.runBuild(Main.java:811) >>> [InstallSchema] at org.apache.tools.ant.Main.startAnt(Main.java:217) >>> [InstallSchema] at >>> org.apache.tools.ant.launch.Launcher.run(Launcher.java:280) >>> [InstallSchema] at >>> org.apache.tools.ant.launch.Launcher.main(Launcher.java:109) >>> >>> BUILD FAILED >>> /Users/Nicolas/GUS/project_home/install/build.xml:38: The following >>> error occurred while executing this line: >>> /Users/Nicolas/GUS/project_home/GUS/build.xml:16: The following error >>> occurred while executing this line: >>> /Users/Nicolas/GUS/project_home/GusSchema/build.xml:63: Unable to >>> locate class >>> >>> Total time: 18 seconds >>> >>> >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> This SF email is sponsosred by: >>> Try Windows Azure free for 90 days Click Here >>> http://p.sf.net/sfu/sfd2d-msazure >>> _______________________________________________ >>> Gusdev-gusdev mailing list >>> Gus...@li... >>> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev >>> >>> >> > > > ------------------------------------------------------------------------------ > This SF email is sponsosred by: > Try Windows Azure free for 90 days Click Here > http://p.sf.net/sfu/sfd2d-msazure > _______________________________________________ > Gusdev-gusdev mailing list > Gus...@li... > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > > -- Atc, Rodrigo Jardim jar...@gm... |
