Re: [GUSDEV] PostLoadGenome.proteomeAnalysis.loadLowComplexityFile

[Adhemar <az...@gm...>]

Thanks Brian,
It worked fine.
-Adhemar

2011/6/24 Brian Brunk <br...@pc...>

> Adhemar, my memory is that the default max is 10000 object in memory at
> once which is usually sufficient as there is seldom transactions that would
> exceed that.  You can increase this default in the plugin by adding the
> following line .. actually can use any of the objects for this but the
> context has the algorighmInvocation object so this uses that.
>
> $ctx->{'self_inv'}->setMaximumNumberOfObjects(50000);
>
> This will increase the limit to 50,000 .. could make it larger if you need
> to do so.  Now that machines have more memory we should probably consider
> increasing the default limit.  It is there to keep developers from not
> removing from the cache in each loop since the objects can't be garbage
> collected until that is done.
>
> -Brian
>
>
> On Jun 24, 2011, at 2:35 PM, Adhemar wrote:
>
> Hi,
> The plugin ApiCommonData::Load::Plugin::InsertLowComplexityFeature also has
> the problem with the maximum number of objects in the memory.
> How can I fix this?
>
> The full log is attached and here is the error message:
>
> ERROR MESSAGE:  You have exceeded the maximum number of allowable objects
> in memory:
>   You must use the method 'undefPointerCache()' in each loop
>     to clear the cache and allow garbage collection!!
>  If you need > 10000 objects at one time,
>    then increase the default number with the method
> 'setMaximumNumberOfObjects(<number>)' at
> /storage/Data/db/SchistoDB/gusApps/gus_home/lib/perl/GUS/ObjRelP/DbiDatabase.pm
> line 483
>
> Thanks,
> -Adhemar
>
>
> <step.err>
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> Brian P. Brunk, Ph.D.
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