Re: [GUSDEV] Gusdev-gusdev Digest, Vol 19, Issue 2

[chawla <ch...@bi...>]

Hi all
I tried dropping the database and user , with what suggested by Dr Chris.
I was confused with the names used here such as  APIDB which doesn't 
looks looks like a user and thus I got the errors with these as shown below.
but the database mygus and user gus_w was dropped successfully.

After this I try to install gus again and got errors related to java. 
These are shown further below. Kindly suggest a possible solution.


drop database mygus;
DROP DATABASE
postgres=# drop user APIDB cascade;
ERROR:  syntax error at or near "cascade"
LINE 1: drop user APIDB cascade;

                         ^
postgres=#  drop user STUDYVER cascade;
ERROR:  syntax error at or near "cascade"
LINE 1: drop user STUDYVER cascade;
                            ^
postgres=#  drop user TESS cascade;
ERROR:  syntax error at or near "cascade"
LINE 1: drop user TESS cascade;
                        ^
postgres=#  drop user TESSVER cascade;
ERROR:  syntax error at or near "cascade"
LINE 1: drop user TESSVER cascade;
                           ^
postgres=#  DROP ROLE gus_w;
DROP ROLE
postgres=#  DROP ROLE gus_r;
**********************************************
build GUS install -append -installDBSchema

errors:
  [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.SRes.ECPathway_Row
     [javac]     public void setModificationDate (notdefyet value)
     [javac]                                      ^
     [javac] 
/home/chawla/GUS/project_home/GUS/Model/src/java/org/gusdb/model/SRes/ECPathway_Row.java:83: 
cannot find symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.SRes.ECPathway_Row
     [javac]     public notdefyet getModificationDate () { return 
(notdefyet)get_Attribute("modification_date"); }
     [javac]            ^
     [javac] 
/home/chawla/GUS/project_home/GUS/Model/src/java/org/gusdb/model/DoTS/AnatomyLOE_Row.java:78: 
cannot find symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.DoTS.AnatomyLOE_Row
     [javac]     public void setModificationDate (notdefyet value)
     [javac]                                      ^
     [javac] 
/home/chawla/GUS/project_home/GUS/Model/src/java/org/gusdb/model/DoTS/AnatomyLOE_Row.java:83: 
cannot find symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.DoTS.AnatomyLOE_Row
     [javac]     public notdefyet getModificationDate () { return 
(notdefyet)get_Attribute("modification_date"); }
     [javac]            ^
     [javac] 
/home/chawla/GUS/project_home/GUS/Model/src/java/org/gusdb/model/PROT/FeatureSet_Row.java:86: 
cannot find symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.PROT.FeatureSet_Row
     [javac]     public void setModificationDate (notdefyet value)
     [javac]                                      ^
     [javac] 
/home/chawla/GUS/project_home/GUS/Model/src/java/org/gusdb/model/PROT/FeatureSet_Row.java:91: 
cannot find symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.PROT.FeatureSet_Row
     [javac]     public notdefyet getModificationDate () { return 
(notdefyet)get_Attribute("modification_date"); }
     [javac]            ^
     [javac] Note: Some input files use unchecked or unsafe operations.
     [javac] Note: Recompile with -Xlint:unchecked for details.
     [javac] 100 errors

Thanks
Konika


On 04/28/2011 12:13 AM, gus...@li... wrote:
>
>
> ------
>
> Message: 3
> Date: Wed, 27 Apr 2011 11:38:40 -0300
> From: Rodrigo Jardim<jar...@gm...>
> Subject: Re: [GUSDEV] Build failed - couldn't install GUS
> To: Chris Stoeckert<sto...@pc...>
> Cc: gus...@li..., chawla<ch...@bi...>
> Message-ID:<BANLkTi=KeiJwV=d9i...@ma...>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Dear Konika,
>
> I think your problem could be solved with the parameters -Xmx and -Xms in
> java (JRE). But, I don't know where you put this in the scripts of GUS.
> Maybe Dr. Chris know.  I hope I have helped you. (sorry for my english!)
>
> Regards,
> Rodrigo Jardim
>
> 2011/4/27 Chris Stoeckert<sto...@pc...>
>
>
>>
>