Re: [GUSDEV] Build failed - couldn't install GUS

[Chris S. <sto...@pc...>]

Dear Rodrigo, thank you for your suggestion.

Dear Konika, I also got this feedback:
> I suggest dropping all the schemas and tables and starting fresh (being sure that the correct database is configured and doesn't have data). The following is what I use to recycle a database for GUS a install.
> 
> 
> drop user APIDB cascade;
> drop user CORE cascade;
> drop user COREVER cascade;
> drop user DOTS cascade;
> drop user DOTSVER cascade;
> drop user PROT cascade;
> drop user PROTVER cascade;
> drop user RAD cascade;
> drop user RADVER cascade;
> drop user SRES cascade;
> drop user SRESVER cascade;
> drop user STUDY cascade;
> drop user STUDYVER cascade;
> drop user TESS cascade;
> drop user TESSVER cascade;
> DROP ROLE GUS_W;
> DROP ROLE GUS_R;

Chris

On Apr 27, 2011, at 10:38 AM, Rodrigo Jardim wrote:

> Dear Konika,
> 
> I think your problem could be solved with the parameters -Xmx and -Xms in java (JRE). But, I don't know where you put this in the scripts of GUS. Maybe Dr. Chris know.  I hope I have helped you. (sorry for my english!) 
> 
> Regards,
> Rodrigo Jardim
> 
> 2011/4/27 Chris Stoeckert <sto...@pc...>
> Dear Konika,
> Sorry for not replying earlier. I'll ask around and see if we can get some suggestions for you.
> Cheers,
> Chris
> 
> Chris Stoeckert, Ph.D.
> Research Professor, Dept. of Genetics
> 1415 Blockley Hall, Center for Bioinformatics
> 423 Guardian Dr., University of Pennsylvania
> Philadelphia, PA 19104
> Ph: 215-573-4409 FAX: 215-573-3111
> http://www.cbil.upenn.edu
> 
> 
> On Apr 17, 2011, at 6:28 PM, chawla wrote:
> 
>> Hi
>> I get the following error while installing gus schema , after following 
>> all the steps given in your document.
>> 
>> BUILD FAILED
>>>> /database/gusdb/GUS/project_home/install/build.xml:28: The following error
>>>> occurred while executing this line:
>>>> /database/gusdb/GUS/project_home/GUS/build.xml:92: java.io.IOException: Error
>>>> executing SQL: '
>>>> CREATE SCHEMA TESSVer' Error: ERROR: schema "tessver" already exists
>>>> 
>> 
>> 
>> I do this on ubuntu 10.04
>> could anyone please look at this and give a possible solution, it is 
>> really urgent.
>> Thanks
>> Konika
>> 
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> -- 
> Atc,
> Rodrigo Jardim
> jar...@gm...
> 
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