Re: [GUSDEV] Mailman privacy alert

[João D. L. <lir...@gm...>]

Hello,

I saw the updated bootstrap data page and I think is still wrong.

In page I see:

ga +create GUS::Common::Plugin::LoadGusXml --commit

But, for me, didn't work. For me, only works:

ga +create GUS::*Supported*::Plugin::LoadGusXml --commit


And another mistake. The command line:

ga +create GUS::Common::Plugin::LoadTaxon --commit

must be:

ga +create GUS:*:Supported*::Plugin::LoadTaxon --commit


And, finally, in the command line:

ga +create GUS::Common::Plugin::LoadPfam --commit

Didnt work for me. I cant find the correct one. Changing the Common for
Supported didnt work for this one.

In the session Load Taxonomy, it is missing a argument in command line. (
--merge )
The compete command line is:

ga GUS::Supported::Plugin::LoadTaxon --gencode=/$YOUR_PATH/gencode.dmp
--names=/$YOUR_PATH/names.dmp --nodes=/$YOUR_PATH/nodes.dmp
--merged=/$YOUR_PATH/merged.dmp --commit


And another doubt.
In the final os session  Dots::SequenceType in bootstrap page, there is a
warning about the loadrow, and above the command line. This command line is
necessary ? I need to do it ? I didnt undestand this part. Its only a
comentary about this command line or its the right command line ?

ga GUS::Common::Plugin::SubmitRow --tablename DoTS::SequenceType
   --attrlist sequence_type_id,nucleotide_type,sub_type,strand,hierarchy,parent_sequence_type_id,name,description
   --valuelist "1^^^DNA^^^null^^^null^^^1^^^1^^^DNA^^^unkown strandedness"
   --commit



I  dont understand ver well the plugins. Where can I find the documentaion
of each plugin?
I dont understand well how can I choose  the data to populate GUS. I would
like to specify waht kind of  sequence i want to insert, but from ncbi, for
example. ( example: i only want sequences from leshimania ).

Thanks a lot.


Att,

-- 
João David de Lira
Universidade Estadual do Ceará - UECE