Menu
▾
▴
gusdev-gusdev
|
From: Chris T. <cmt...@gm...> - 2005-11-08 20:58:31
|
When I run: build GUS install -append -installDBSchema I immediately get: ant [options] [target [target2 [target3] ...]] and then 'build' terminates I couldn't find anything in the list archives with this output. Is there a better way to search for this in the archives for future reference? I installed Ant myself, so this could very likely be the problem. -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
|
From: <msa...@pc...> - 2005-11-08 21:28:07
|
Hi Chris, I would double check your version of Ant. I believe 1.6.2 is required. Also, if on Linux, make sure you're using the copy you think you are-- RedHat for a while included a non-compatible version of Ant. Do 'which ant' to display the version in use. Also, make sure there is no /etc/ant.conf file. --Mike Quoting Chris Topinka <cmt...@gm...>: > When I run: > > build GUS install -append -installDBSchema > > I immediately get: > ant [options] [target [target2 [target3] ...]] > > and then 'build' terminates > > I couldn't find anything in the list archives with this output. Is there a > better way to search for this in the archives for future reference? > > I installed Ant myself, so this could very likely be the problem. > -- > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... > |
|
From: Chris T. <cmt...@gm...> - 2005-11-10 20:12:33
|
PATH=3D/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/usr/lo= cal/apache- ant-1.6.5 /bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_home/install/bi= n:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/oracle= /product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin this is my $PATH which java and which ant now returns the bins that I want and installed in my home (I don't have root unfortunately). Before which had old ant and no java. Now when I run build it exits immediately with no output. What does build require exactly? In what order? Is there a simpler way to get the xml schema onto my oracle db? Thanks On 11/8/05, msa...@pc... <msa...@pc...> wrote: > > Hi Chris, > > I would double check your version of Ant. I believe 1.6.2 is required. > Also, > if on Linux, make sure you're using the copy you think you are-- RedHat > for a > while included a non-compatible version of Ant. Do 'which ant' to display > the > version in use. Also, make sure there is no /etc/ant.conf file. > > --Mike > > Quoting Chris Topinka <cmt...@gm...>: > > > When I run: > > > > build GUS install -append -installDBSchema > > > > I immediately get: > > ant [options] [target [target2 [target3] ...]] > > > > and then 'build' terminates > > > > I couldn't find anything in the list archives with this output. Is ther= e > a > > better way to search for this in the archives for future reference? > > > > I installed Ant myself, so this could very likely be the problem. > > -- > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... > > > > > > -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
|
From: Chris T. <cmt...@gm...> - 2005-11-10 20:18:31
|
dbiDsn=3D*perl_dbi_string*[image: 2] jdbcDsn=3D*jdbc_conection_string Are these fields in the config file necessary for install to work?=20 How do I know what these are? I installed my own oracle. how do i look these up? thanks * On 11/10/05, Chris Topinka <cmt...@gm...> wrote: > > > PATH=3D/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/usr/= local/apache- > ant-1.6.5/bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_home= /install/bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:= /opt/oracle/product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > this is my $PATH > > which java and which ant now returns the bins that I want and installed i= n > my home (I don't have root unfortunately). Before which had old ant and n= o > java. > > Now when I run build it exits immediately with no output. > > What does build require exactly? In what order? > > Is there a simpler way to get the xml schema onto my oracle db? > > Thanks > On 11/8/05, msa...@pc... <msa...@pc... > wrote: > > > > Hi Chris, > > > > I would double check your version of Ant. I believe 1.6.2 is required. > > Also, > > if on Linux, make sure you're using the copy you think you are-- RedHat > > for a > > while included a non-compatible version of Ant. Do 'which ant' to > > display the > > version in use. Also, make sure there is no /etc/ant.conf file. > > > > --Mike > > > > Quoting Chris Topinka <cmt...@gm...>: > > > > > When I run: > > > > > > build GUS install -append -installDBSchema > > > > > > I immediately get: > > > ant [options] [target [target2 [target3] ...]] > > > > > > and then 'build' terminates > > > > > > I couldn't find anything in the list archives with this output. Is > > there a > > > better way to search for this in the archives for future reference? > > > > > > I installed Ant myself, so this could very likely be the problem. > > > -- > > > Christopher M. Topinka > > > NLM-BHIRT Predoctoral Fellow in Computer Science > > > 113 Life Sciences Center > > > University of Missouri > > > Columbia, MO 65211 > > > (573)-823-0616 > > > cmt...@mi... > > > > > > > > > > > > > > -- > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... > -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
|
From: Angel P. <an...@ma...> - 2005-11-10 20:20:06
|
Try: $ build GUS install -append -returnErrStatus -installDBSchema This may give you a useful error message. Other than that, try un-commenting line line 41 in build.pl to see the ant command that is run and try cutting/pasting this command to get even more verbose output from straight from ant. Chris Topinka wrote: > PATH=/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/usr/local/apache-ant-1.6.5/bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_home/install/bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/oracle/product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > this is my $PATH > > which java and which ant now returns the bins that I want and > installed in my home (I don't have root unfortunately). Before which > had old ant and no java. > > Now when I run build it exits immediately with no output. > > What does build require exactly? In what order? > > Is there a simpler way to get the xml schema onto my oracle db? > > Thanks > On 11/8/05, *msa...@pc... <mailto:msa...@pc...>* > <msa...@pc... <mailto:msa...@pc...>> wrote: > > Hi Chris, > > I would double check your version of Ant. I believe 1.6.2 is > required. Also, > if on Linux, make sure you're using the copy you think you are-- > RedHat for a > while included a non-compatible version of Ant. Do 'which ant' to > display the > version in use. Also, make sure there is no /etc/ant.conf file. > > --Mike > > Quoting Chris Topinka <cmt...@gm... > <mailto:cmt...@gm...>>: > > > When I run: > > > > build GUS install -append -installDBSchema > > > > I immediately get: > > ant [options] [target [target2 [target3] ...]] > > > > and then 'build' terminates > > > > I couldn't find anything in the list archives with this output. > Is there a > > better way to search for this in the archives for future reference? > > > > I installed Ant myself, so this could very likely be the problem. > > -- > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... <mailto:cmt...@mi...> > > > > > > > > > -- > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... <mailto:cmt...@mi...> -- Angel Pizarro Director, Bioinformatics Facility Institute for Translational Medicine and Therapeutics University of Pennsylvania 806 BRB II/III 421 Curie Blvd. Philadelphia, PA 19104-6160 P: 215-573-3736 F: 215-573-9004 |
|
From: Chris T. <cmt...@gm...> - 2005-11-10 20:55:19
|
when I run ant cmd from cmd line I get: \Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/tools/ant/launch/Launcher does this mean I need certain libraries on my $CLASSPATH? Which ones and where are they? I'm using 2.4.21-15.EL RedHat but have installed my own java and ant becaus= e I don't have root. On 11/10/05, Angel Pizarro <an...@ma...> wrote: > > Try: > > $ build GUS install -append -returnErrStatus -installDBSchema > > This may give you a useful error message. Other than that, try > un-commenting line line 41 in build.pl to see the ant command that is > run and try cutting/pasting this command to get even more verbose output > from straight from ant. > > > > > Chris Topinka wrote: > > > > PATH=3D/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/usr/= local/apache- > ant-1.6.5 > /bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_home/install/= bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/orac= le/product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > > > > this is my $PATH > > > > which java and which ant now returns the bins that I want and > > installed in my home (I don't have root unfortunately). Before which > > had old ant and no java. > > > > Now when I run build it exits immediately with no output. > > > > What does build require exactly? In what order? > > > > Is there a simpler way to get the xml schema onto my oracle db? > > > > Thanks > > On 11/8/05, *msa...@pc... <mailto:msa...@pc...>* > > <msa...@pc... <mailto:msa...@pc...>> wrote: > > > > Hi Chris, > > > > I would double check your version of Ant. I believe 1.6.2 is > > required. Also, > > if on Linux, make sure you're using the copy you think you are-- > > RedHat for a > > while included a non-compatible version of Ant. Do 'which ant' to > > display the > > version in use. Also, make sure there is no /etc/ant.conf file. > > > > --Mike > > > > Quoting Chris Topinka <cmt...@gm... > > <mailto:cmt...@gm...>>: > > > > > When I run: > > > > > > build GUS install -append -installDBSchema > > > > > > I immediately get: > > > ant [options] [target [target2 [target3] ...]] > > > > > > and then 'build' terminates > > > > > > I couldn't find anything in the list archives with this output. > > Is there a > > > better way to search for this in the archives for future reference? > > > > > > I installed Ant myself, so this could very likely be the problem. > > > -- > > > Christopher M. Topinka > > > NLM-BHIRT Predoctoral Fellow in Computer Science > > > 113 Life Sciences Center > > > University of Missouri > > > Columbia, MO 65211 > > > (573)-823-0616 > > > cmt...@mi... <mailto:cmt...@mi...> > > > > > > > > > > > > > > > > > -- > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... <mailto:cmt...@mi...> > > > > -- > > Angel Pizarro > Director, Bioinformatics Facility > Institute for Translational Medicine and Therapeutics > University of Pennsylvania > 806 BRB II/III > 421 Curie Blvd. > Philadelphia, PA 19104-6160 > > P: 215-573-3736 > F: 215-573-9004 > > > > ------------------------------------------------------- > SF.Net email is sponsored by: > Tame your development challenges with Apache's Geronimo App Server. > Download > it for free - -and be entered to win a 42" plasma tv or your very own > Sony(tm)PSP. Click here to play: http://sourceforge.net/geronimo.php > _______________________________________________ > Gusdev-gusdev mailing list > Gus...@li... > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
|
From: Chris T. <cmt...@gm...> - 2005-11-15 21:50:58
|
I run ant cmd from build.pl with --noconfig at cmd line and get: Buildfile: /install/build.xml does not exist! Build failed what variable is setting the path to build.xml? Thanks, Chris On 11/10/05, Chris Topinka <cmt...@gm...> wrote: > > when I run ant cmd from cmd line I get: > > \Exception in thread "main" java.lang.NoClassDefFoundError: > org/apache/tools/ant/launch/Launcher > > does this mean I need certain libraries on my $CLASSPATH? Which ones and > where are they? > > I'm using 2.4.21-15.EL RedHat but have installed my own java and antbecau= se I don't have root. > > On 11/10/05, Angel Pizarro < an...@ma...> wrote: > > > > Try: > > > > $ build GUS install -append -returnErrStatus -installDBSchema > > > > This may give you a useful error message. Other than that, try > > un-commenting line line 41 in build.pl to see the ant command that is > > run and try cutting/pasting this command to get even more verbose outpu= t > > from straight from ant. > > > > > > > > > > Chris Topinka wrote: > > > > > > > PATH=3D/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/us= r/local/apache- > > ant-1.6.5/bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_ho= me/install/bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bi= n:/opt/oracle/product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > > > > > > > > > this is my $PATH > > > > > > which java and which ant now returns the bins that I want and > > > installed in my home (I don't have root unfortunately). Before which > > > had old ant and no java. > > > > > > Now when I run build it exits immediately with no output. > > > > > > What does build require exactly? In what order? > > > > > > Is there a simpler way to get the xml schema onto my oracle db? > > > > > > Thanks > > > On 11/8/05, *msa...@pc... <mailto:msa...@pc...>= * > > > < msa...@pc... <mailto:msa...@pc...>> wrote: > > > > > > Hi Chris, > > > > > > I would double check your version of Ant. I believe 1.6.2 is > > > required. Also, > > > if on Linux, make sure you're using the copy you think you are-- > > > RedHat for a > > > while included a non-compatible version of Ant. Do 'which ant' to > > > display the > > > version in use. Also, make sure there is no /etc/ant.conf file. > > > > > > --Mike > > > > > > Quoting Chris Topinka <cmt...@gm... > > > <mailto:cmt...@gm...>>: > > > > > > > When I run: > > > > > > > > build GUS install -append -installDBSchema > > > > > > > > I immediately get: > > > > ant [options] [target [target2 [target3] ...]] > > > > > > > > and then 'build' terminates > > > > > > > > I couldn't find anything in the list archives with this output. > > > Is there a > > > > better way to search for this in the archives for future reference? > > > > > > > > I installed Ant myself, so this could very likely be the problem. > > > > -- > > > > Christopher M. Topinka > > > > NLM-BHIRT Predoctoral Fellow in Computer Science > > > > 113 Life Sciences Center > > > > University of Missouri > > > > Columbia, MO 65211 > > > > (573)-823-0616 > > > > cmt...@mi... <mailto:cmt...@mi...> > > > > > > > > > > > > > > > > > > > > > > > > > -- > > > Christopher M. Topinka > > > NLM-BHIRT Predoctoral Fellow in Computer Science > > > 113 Life Sciences Center > > > University of Missouri > > > Columbia, MO 65211 > > > (573)-823-0616 > > > cmt...@mi... <mailto:cmt...@mi...> > > > > > > > > -- > > > > Angel Pizarro > > Director, Bioinformatics Facility > > Institute for Translational Medicine and Therapeutics > > University of Pennsylvania > > 806 BRB II/III > > 421 Curie Blvd. > > Philadelphia, PA 19104-6160 > > > > P: 215-573-3736 > > F: 215-573-9004 > > > > > > > > ------------------------------------------------------- > > SF.Net email is sponsored by: > > Tame your development challenges with Apache's Geronimo App Server. > > Download > > it for free - -and be entered to win a 42" plasma tv or your very own > > Sony(tm)PSP. Click here to play: http://sourceforge.net/geronimo.php > > _______________________________________________ > > Gusdev-gusdev mailing list > > Gus...@li... > > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > > > > > > -- > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... > -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
|
From: Steve F. <sfi...@pc...> - 2005-11-15 21:54:10
|
$PROJECT_HOME i think steve Chris Topinka wrote: > I run ant cmd from build.pl with --noconfig at cmd line and get: > > Buildfile: /install/build.xml does not exist! > Build failed > > > what variable is setting the path to build.xml? > > Thanks, > > Chris > > On 11/10/05, *Chris Topinka* <cmt...@gm... > <mailto:cmt...@gm...>> wrote: > > when I run ant cmd from cmd line I get: > > \Exception in thread "main" java.lang.NoClassDefFoundError: > org/apache/tools/ant/launch/Launcher > > does this mean I need certain libraries on my $CLASSPATH? Which > ones and where are they? > > I'm using 2.4.21-15.EL RedHat but have installed my own java and > ant because I don't have root. > > > On 11/10/05, *Angel Pizarro* < an...@ma... > <mailto:an...@ma...>> wrote: > > Try: > > $ build GUS install -append -returnErrStatus -installDBSchema > > This may give you a useful error message. Other than that, try > un-commenting line line 41 in build.pl to see the ant command > that is > run and try cutting/pasting this command to get even more > verbose output > from straight from ant. > > > > > Chris Topinka wrote: > >> PATH=/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/usr/local/apache-ant-1.6.5/bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_home/install/bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/oracle/product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > >> >> >> this is my $PATH >> >> which java and which ant now returns the bins that I want and >> installed in my home (I don't have root > unfortunately). Before which >> had old ant and no java. >> >> Now when I run build it exits immediately with no output. >> >> What does build require exactly? In what order? >> >> Is there a simpler way to get the xml schema onto my oracle db? >> >> Thanks >> On 11/8/05, *msa...@pc... > <mailto:msa...@pc...> <mailto: > msa...@pc... <mailto:msa...@pc...>>* >> < msa...@pc... <mailto:msa...@pc...> > <mailto:msa...@pc... > <mailto:msa...@pc...>>> wrote: >> >> Hi Chris, >> >> I would double check your version of Ant. I believe 1.6.2 is >> required. Also, >> if on Linux, make sure you're using the copy you think > you are-- >> RedHat for a >> while included a non-compatible version of Ant. Do > 'which ant' to >> display the >> version in use. Also, make sure there is no > /etc/ant.conf file. >> >> --Mike >> >> Quoting Chris Topinka < cmt...@gm... > <mailto:cmt...@gm...> >> <mailto:cmt...@gm... <mailto:cmt...@gm...>>>: >> >> > When I run: >> > >> > build GUS install -append -installDBSchema >> > >> > I immediately get: >> > ant [options] [target [target2 [target3] ...]] >> > >> > and then 'build' terminates >> > >> > I couldn't find anything in the list archives with this > output. >> Is there a >> > better way to search for this in the archives for > future reference? >> > >> > I installed Ant myself, so this could very likely be > the problem. >> > -- >> > Christopher M. Topinka >> > NLM-BHIRT Predoctoral Fellow in Computer Science >> > 113 Life Sciences Center >> > University of Missouri >> > Columbia, MO 65211 >> > (573)-823-0616 >> > cmt...@mi... <mailto:cmt...@mi...> > <mailto: cmt...@mi... <mailto:cmt...@mi...>> >> > >> >> >> >> >> >> >> -- >> Christopher M. Topinka >> NLM-BHIRT Predoctoral Fellow in Computer Science >> 113 Life Sciences Center >> University of Missouri >> Columbia, MO 65211 >> (573)-823-0616 >> cmt...@mi... <mailto:cmt...@mi...> <mailto: > cmt...@mi... <mailto:cmt...@mi...>> > > > > -- > > Angel Pizarro > Director, Bioinformatics Facility > Institute for Translational Medicine and Therapeutics > University of Pennsylvania > 806 BRB II/III > 421 Curie Blvd. > Philadelphia, PA 19104-6160 > > P: 215-573-3736 > F: 215-573-9004 > > > > ------------------------------------------------------- > SF.Net email is sponsored by: > Tame your development challenges with Apache's Geronimo App > Server. Download > it for free - -and be entered to win a 42" plasma tv or your > very own > Sony(tm)PSP. Click here to play: > http://sourceforge.net/geronimo.php > _______________________________________________ > Gusdev-gusdev mailing list > Gus...@li... > <mailto:Gus...@li...> > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > <https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev> > > > > > -- > > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... <mailto:cmt...@mi...> > > > > > -- > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... <mailto:cmt...@mi...> |
|
From: Chris T. <cmt...@gm...> - 2005-11-16 00:28:38
|
ok. now I get to the point of: [InstallSchema] SEVERE: Unable to connect to database. DSN=3D' jdbc:oracle:thin:@ws17.itcomplab.missouri.edu:1521<http://jdbc:oracle:thin:= @ws17.itcomplab.missouri.edu:1521> :ws17.itcomplab.missouri.edu <http://ws17.itcomplab.missouri.edu>' [InstallSchema] java.sql.SQLException: Listener refused the connection with the following error: [InstallSchema] ORA-12505, TNS:listener does not currently know of SID give= n in connect descriptor [InstallSchema] The Connection descriptor used by the client was: [InstallSchema] ws17.itcomplab.missouri.edu:1521<http://ws17.itcomplab.missouri.edu:1521> :ws17.itcomplab.missouri.edu <http://ws17.itcomplab.missouri.edu> How can I make sure this is set right? Thanks, Chris On 11/15/05, Steve Fischer <sfi...@pc...> wrote: > > $PROJECT_HOME i think > > steve > > Chris Topinka wrote: > > > I run ant cmd from build.pl with --noconfig at cmd line and get: > > > > Buildfile: /install/build.xml does not exist! > > Build failed > > > > > > what variable is setting the path to build.xml? > > > > Thanks, > > > > Chris > > > > On 11/10/05, *Chris Topinka* <cmt...@gm... > > <mailto:cmt...@gm...>> wrote: > > > > when I run ant cmd from cmd line I get: > > > > \Exception in thread "main" java.lang.NoClassDefFoundError: > > org/apache/tools/ant/launch/Launcher > > > > does this mean I need certain libraries on my $CLASSPATH? Which > > ones and where are they? > > > > I'm using 2.4.21-15.EL RedHat but have installed my own java and > > ant because I don't have root. > > > > > > On 11/10/05, *Angel Pizarro* < an...@ma... > > <mailto:an...@ma...>> wrote: > > > > Try: > > > > $ build GUS install -append -returnErrStatus -installDBSchema > > > > This may give you a useful error message. Other than that, try > > un-commenting line line 41 in build.pl to see the ant command > > that is > > run and try cutting/pasting this command to get even more > > verbose output > > from straight from ant. > > > > > > > > > > Chris Topinka wrote: > > > >> > PATH=3D/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/oracle/usr/= local/apache- > ant-1.6.5 > /bin:/home/oracle/GUS/gus_home/bin:/home/oracle/GUS/project_home/install/= bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/orac= le/product/9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > >> > >> > >> this is my $PATH > >> > >> which java and which ant now returns the bins that I want and > >> installed in my home (I don't have root > > unfortunately). Before which > >> had old ant and no java. > >> > >> Now when I run build it exits immediately with no output. > >> > >> What does build require exactly? In what order? > >> > >> Is there a simpler way to get the xml schema onto my oracle db? > >> > >> Thanks > >> On 11/8/05, *msa...@pc... > > <mailto:msa...@pc...> <mailto: > > msa...@pc... <mailto:msa...@pc...>>* > >> < msa...@pc... <mailto:msa...@pc...> > > <mailto:msa...@pc... > > <mailto:msa...@pc...>>> wrote: > >> > >> Hi Chris, > >> > >> I would double check your version of Ant. I believe 1.6.2 is > >> required. Also, > >> if on Linux, make sure you're using the copy you think > > you are-- > >> RedHat for a > >> while included a non-compatible version of Ant. Do > > 'which ant' to > >> display the > >> version in use. Also, make sure there is no > > /etc/ant.conf file. > >> > >> --Mike > >> > >> Quoting Chris Topinka < cmt...@gm... > > <mailto:cmt...@gm...> > >> <mailto:cmt...@gm... <mailto:cmt...@gm...>>>: > >> > >> > When I run: > >> > > >> > build GUS install -append -installDBSchema > >> > > >> > I immediately get: > >> > ant [options] [target [target2 [target3] ...]] > >> > > >> > and then 'build' terminates > >> > > >> > I couldn't find anything in the list archives with this > > output. > >> Is there a > >> > better way to search for this in the archives for > > future reference? > >> > > >> > I installed Ant myself, so this could very likely be > > the problem. > >> > -- > >> > Christopher M. Topinka > >> > NLM-BHIRT Predoctoral Fellow in Computer Science > >> > 113 Life Sciences Center > >> > University of Missouri > >> > Columbia, MO 65211 > >> > (573)-823-0616 > >> > cmt...@mi... <mailto:cmt...@mi...> > > <mailto: cmt...@mi... <mailto:cmt...@mi...>> > >> > > >> > >> > >> > >> > >> > >> > >> -- > >> Christopher M. Topinka > >> NLM-BHIRT Predoctoral Fellow in Computer Science > >> 113 Life Sciences Center > >> University of Missouri > >> Columbia, MO 65211 > >> (573)-823-0616 > >> cmt...@mi... <mailto:cmt...@mi...> <mailto: > > cmt...@mi... <mailto:cmt...@mi...>> > > > > > > > > -- > > > > Angel Pizarro > > Director, Bioinformatics Facility > > Institute for Translational Medicine and Therapeutics > > University of Pennsylvania > > 806 BRB II/III > > 421 Curie Blvd. > > Philadelphia, PA 19104-6160 > > > > P: 215-573-3736 > > F: 215-573-9004 > > > > > > > > ------------------------------------------------------- > > SF.Net email is sponsored by: > > Tame your development challenges with Apache's Geronimo App > > Server. Download > > it for free - -and be entered to win a 42" plasma tv or your > > very own > > Sony(tm)PSP. Click here to play: > > http://sourceforge.net/geronimo.php > > _______________________________________________ > > Gusdev-gusdev mailing list > > Gus...@li... > > <mailto:Gus...@li...> > > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > > <https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev> > > > > > > > > > > -- > > > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... <mailto:cmt...@mi...> > > > > > > > > > > -- > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... <mailto:cmt...@mi...> > > -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
|
From: Michael S. <msa...@pc...> - 2005-11-16 14:33:27
|
Hi Chris, That last part of your JDBC connection string should be the SID of the database-- it looks like you've got the hostname repeated. Hope this helps. --Mike On Nov 15, 2005, at 5:08 PM, Chris Topinka wrote: > ok. now I get to the point of: > > [InstallSchema] SEVERE: Unable to connect to database. > DSN='jdbc:oracle:thin:@ws17.itcomplab.missouri.edu: > 1521:ws17.itcomplab.missouri.edu' > [InstallSchema] java.sql.SQLException: Listener refused the > connection with the following error: > [InstallSchema] ORA-12505, TNS:listener does not currently know of > SID given in connect descriptor > [InstallSchema] The Connection descriptor used by the client was: > [InstallSchema] ws17.itcomplab.missouri.edu: > 1521:ws17.itcomplab.missouri.edu > > > How can I make sure this is set right? > > Thanks, > > Chris > > On 11/15/05, Steve Fischer <sfi...@pc...> wrote: > $PROJECT_HOME i think > > steve > > Chris Topinka wrote: > > > I run ant cmd from build.pl with --noconfig at cmd line and get: > > > > Buildfile: /install/build.xml does not exist! > > Build failed > > > > > > what variable is setting the path to build.xml? > > > > Thanks, > > > > Chris > > > > On 11/10/05, *Chris Topinka* <cmt...@gm... > > <mailto:cmt...@gm...>> wrote: > > > > when I run ant cmd from cmd line I get: > > > > \Exception in thread "main" java.lang.NoClassDefFoundError : > > org/apache/tools/ant/launch/Launcher > > > > does this mean I need certain libraries on my $CLASSPATH? Which > > ones and where are they? > > > > I'm using 2.4.21-15.EL RedHat but have installed my own java and > > ant because I don't have root. > > > > > > On 11/10/05, *Angel Pizarro* < an...@ma... > > <mailto: an...@ma...>> wrote: > > > > Try: > > > > $ build GUS install -append -returnErrStatus - > installDBSchema > > > > This may give you a useful error message. Other than > that, try > > un-commenting line line 41 in build.pl to see the ant > command > > that is > > run and try cutting/pasting this command to get even more > > verbose output > > from straight from ant. > > > > > > > > > > Chris Topinka wrote: > > > >> PATH=/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/ > oracle/usr/local/apache-ant-1.6.5/bin:/home/oracle/GUS/gus_home/ > bin:/home/oracle/GUS/project_home/install/bin:/usr/kerberos/bin:/ > usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/oracle/product/ > 9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > >> > >> > >> this is my $PATH > >> > >> which java and which ant now returns the bins that I want and > >> installed in my home (I don't have root > > unfortunately). Before which > >> had old ant and no java. > >> > >> Now when I run build it exits immediately with no output. > >> > >> What does build require exactly? In what order? > >> > >> Is there a simpler way to get the xml schema onto my oracle db? > >> > >> Thanks > >> On 11/8/05, *msa...@pc... > > <mailto:msa...@pc... > <mailto: > > msa...@pc... <mailto:msa...@pc...>>* > >> < msa...@pc... <mailto:msa...@pc...> > > <mailto:msa...@pc... > > <mailto: msa...@pc...>>> wrote: > >> > >> Hi Chris, > >> > >> I would double check your version of Ant. I believe 1.6.2 is > >> required. Also, > >> if on Linux, make sure you're using the copy you think > > you are-- > >> RedHat for a > >> while included a non-compatible version of Ant. Do > > 'which ant' to > >> display the > >> version in use. Also, make sure there is no > > /etc/ant.conf file. > >> > >> --Mike > >> > >> Quoting Chris Topinka < cmt...@gm... > > <mailto:cmt...@gm...> > >> <mailto:cmt...@gm... <mailto: cmt...@gm...>>>: > >> > >> > When I run: > >> > > >> > build GUS install -append -installDBSchema > >> > > >> > I immediately get: > >> > ant [options] [target [target2 [target3] ...]] > >> > > >> > and then 'build' terminates > >> > > >> > I couldn't find anything in the list archives with this > > output. > >> Is there a > >> > better way to search for this in the archives for > > future reference? > >> > > >> > I installed Ant myself, so this could very likely be > > the problem. > >> > -- > >> > Christopher M. Topinka > >> > NLM-BHIRT Predoctoral Fellow in Computer Science > >> > 113 Life Sciences Center > >> > University of Missouri > >> > Columbia, MO 65211 > >> > (573)-823-0616 > >> > cmt...@mi... <mailto:cmt...@mi... > > > <mailto: cmt...@mi... <mailto:cmt...@mi...>> > >> > > >> > >> > >> > >> > >> > >> > >> -- > >> Christopher M. Topinka > >> NLM-BHIRT Predoctoral Fellow in Computer Science > >> 113 Life Sciences Center > >> University of Missouri > >> Columbia, MO 65211 > >> (573)-823-0616 > >> cmt...@mi... <mailto:cmt...@mi...> <mailto: > > cmt...@mi... <mailto:cmt...@mi...>> > > > > > > > > -- > > > > Angel Pizarro > > Director, Bioinformatics Facility > > Institute for Translational Medicine and Therapeutics > > University of Pennsylvania > > 806 BRB II/III > > 421 Curie Blvd. > > Philadelphia, PA 19104-6160 > > > > P: 215-573-3736 > > F: 215-573-9004 > > > > > > > > ------------------------------------------------------- > > SF.Net email is sponsored by: > > Tame your development challenges with Apache's Geronimo App > > Server. Download > > it for free - -and be entered to win a 42" plasma tv or your > > very own > > Sony(tm)PSP. Click here to play: > > http://sourceforge.net/geronimo.php > > _______________________________________________ > > Gusdev-gusdev mailing list > > Gus...@li... > > <mailto: Gus...@li...> > > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > > < https://lists.sourceforge.net/lists/listinfo/gusdev- > gusdev> > > > > > > > > > > -- > > > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... <mailto: cmt...@mi...> > > > > > > > > > > -- > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... <mailto:cmt...@mi...> > > > > > -- > Christopher M. Topinka > NLM-BHIRT Predoctoral Fellow in Computer Science > 113 Life Sciences Center > University of Missouri > Columbia, MO 65211 > (573)-823-0616 > cmt...@mi... |
|
From: Chris T. <cmt...@gm...> - 2005-11-17 18:30:05
|
I changed jdbc connection string to ws17.itcomplab.missouri.edu:1521<http://ws17.itcomplab.missouri.edu:1521/> :ws17 <http://ws17.itcomplab.missouri.edu/> and get: BUILD FAILED /home/oracle/GUS/project_home/install/build.xml:28: The following error occurred while executing this line: /home/oracle/GUS/project_home/GUS/build.xml:92: Unable to connect to database my db is on the same machine/account I'm running the install script(?) on. Does the jdbc connection string have to deal with this somehow. Do I have t= o have # 1521 port open? Thanks, chris On 11/16/05, Michael Saffitz <msa...@pc...> wrote: > > > Hi Chris, > > That last part of your JDBC connection string should be the SID of > the database-- it looks like you've got the hostname repeated. Hope > this helps. > > --Mike > > On Nov 15, 2005, at 5:08 PM, Chris Topinka wrote: > > > ok. now I get to the point of: > > > > [InstallSchema] SEVERE: Unable to connect to database. > > DSN=3D'jdbc:oracle:thin:@ws17.itcomplab.missouri.edu: > > 1521:ws17.itcomplab.missouri.edu <http://ws17.itcomplab.missouri.edu>' > > [InstallSchema] java.sql.SQLException: Listener refused the > > connection with the following error: > > [InstallSchema] ORA-12505, TNS:listener does not currently know of > > SID given in connect descriptor > > [InstallSchema] The Connection descriptor used by the client was: > > [InstallSchema] ws17.itcomplab.missouri.edu<http://ws17.itcomplab.misso= uri.edu> > : > > 1521:ws17.itcomplab.missouri.edu <http://ws17.itcomplab.missouri.edu> > > > > > > How can I make sure this is set right? > > > > Thanks, > > > > Chris > > > > On 11/15/05, Steve Fischer <sfi...@pc...> wrote: > > $PROJECT_HOME i think > > > > steve > > > > Chris Topinka wrote: > > > > > I run ant cmd from build.pl with --noconfig at cmd line and get: > > > > > > Buildfile: /install/build.xml does not exist! > > > Build failed > > > > > > > > > what variable is setting the path to build.xml? > > > > > > Thanks, > > > > > > Chris > > > > > > On 11/10/05, *Chris Topinka* <cmt...@gm... > > > <mailto:cmt...@gm...>> wrote: > > > > > > when I run ant cmd from cmd line I get: > > > > > > \Exception in thread "main" java.lang.NoClassDefFoundError : > > > org/apache/tools/ant/launch/Launcher > > > > > > does this mean I need certain libraries on my $CLASSPATH? Which > > > ones and where are they? > > > > > > I'm using 2.4.21-15.EL RedHat but have installed my own java and > > > ant because I don't have root. > > > > > > > > > On 11/10/05, *Angel Pizarro* < an...@ma... > > > <mailto: an...@ma...>> wrote: > > > > > > Try: > > > > > > $ build GUS install -append -returnErrStatus - > > installDBSchema > > > > > > This may give you a useful error message. Other than > > that, try > > > un-commenting line line 41 in build.pl to see the ant > > command > > > that is > > > run and try cutting/pasting this command to get even more > > > verbose output > > > from straight from ant. > > > > > > > > > > > > > > > Chris Topinka wrote: > > > > > >> PATH=3D/home/oracle/usr/local/SunWappserver/jdk/jre/bin:/home/ > > oracle/usr/local/apache-ant-1.6.5/bin:/home/oracle/GUS/gus_home/ > > bin:/home/oracle/GUS/project_home/install/bin:/usr/kerberos/bin:/ > > usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/opt/oracle/product/ > > 9.2.0/bin:/sbin:/usr/local/java/bin:/home/oracle/bin > > > > > >> > > >> > > >> this is my $PATH > > >> > > >> which java and which ant now returns the bins that I want and > > >> installed in my home (I don't have root > > > unfortunately). Before which > > >> had old ant and no java. > > >> > > >> Now when I run build it exits immediately with no output. > > >> > > >> What does build require exactly? In what order? > > >> > > >> Is there a simpler way to get the xml schema onto my oracle db? > > >> > > >> Thanks > > >> On 11/8/05, *msa...@pc... > > > <mailto:msa...@pc... > <mailto: > > > msa...@pc... <mailto:msa...@pc...>>* > > >> < msa...@pc... <mailto:msa...@pc...> > > > <mailto:msa...@pc... > > > <mailto: msa...@pc...>>> wrote: > > >> > > >> Hi Chris, > > >> > > >> I would double check your version of Ant. I believe 1.6.2 is > > >> required. Also, > > >> if on Linux, make sure you're using the copy you think > > > you are-- > > >> RedHat for a > > >> while included a non-compatible version of Ant. Do > > > 'which ant' to > > >> display the > > >> version in use. Also, make sure there is no > > > /etc/ant.conf file. > > >> > > >> --Mike > > >> > > >> Quoting Chris Topinka < cmt...@gm... > > > <mailto:cmt...@gm...> > > >> <mailto:cmt...@gm... <mailto: cmt...@gm...>>>: > > >> > > >> > When I run: > > >> > > > >> > build GUS install -append -installDBSchema > > >> > > > >> > I immediately get: > > >> > ant [options] [target [target2 [target3] ...]] > > >> > > > >> > and then 'build' terminates > > >> > > > >> > I couldn't find anything in the list archives with this > > > output. > > >> Is there a > > >> > better way to search for this in the archives for > > > future reference? > > >> > > > >> > I installed Ant myself, so this could very likely be > > > the problem. > > >> > -- > > >> > Christopher M. Topinka > > >> > NLM-BHIRT Predoctoral Fellow in Computer Science > > >> > 113 Life Sciences Center > > >> > University of Missouri > > >> > Columbia, MO 65211 > > >> > (573)-823-0616 > > >> > cmt...@mi... <mailto:cmt...@mi... > > > > <mailto: cmt...@mi... <mailto:cmt...@mi...>> > > >> > > > >> > > >> > > >> > > >> > > >> > > >> > > >> -- > > >> Christopher M. Topinka > > >> NLM-BHIRT Predoctoral Fellow in Computer Science > > >> 113 Life Sciences Center > > >> University of Missouri > > >> Columbia, MO 65211 > > >> (573)-823-0616 > > >> cmt...@mi... <mailto:cmt...@mi...> <mailto: > > > cmt...@mi... <mailto:cmt...@mi...>> > > > > > > > > > > > > -- > > > > > > Angel Pizarro > > > Director, Bioinformatics Facility > > > Institute for Translational Medicine and Therapeutics > > > University of Pennsylvania > > > 806 BRB II/III > > > 421 Curie Blvd. > > > Philadelphia, PA 19104-6160 > > > > > > P: 215-573-3736 > > > F: 215-573-9004 > > > > > > > > > > > > ------------------------------------------------------- > > > SF.Net email is sponsored by: > > > Tame your development challenges with Apache's Geronimo App > > > Server. Download > > > it for free - -and be entered to win a 42" plasma tv or your > > > very own > > > Sony(tm)PSP. Click here to play: > > > http://sourceforge.net/geronimo.php > > > _______________________________________________ > > > Gusdev-gusdev mailing list > > > Gus...@li... > > > <mailto: Gus...@li...> > > > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev > > > < https://lists.sourceforge.net/lists/listinfo/gusdev- > > gusdev> > > > > > > > > > > > > > > > -- > > > > > > Christopher M. Topinka > > > NLM-BHIRT Predoctoral Fellow in Computer Science > > > 113 Life Sciences Center > > > University of Missouri > > > Columbia, MO 65211 > > > (573)-823-0616 > > > cmt...@mi... <mailto: cmt...@mi...> > > > > > > > > > > > > > > > -- > > > Christopher M. Topinka > > > NLM-BHIRT Predoctoral Fellow in Computer Science > > > 113 Life Sciences Center > > > University of Missouri > > > Columbia, MO 65211 > > > (573)-823-0616 > > > cmt...@mi... <mailto:cmt...@mi...> > > > > > > > > > > -- > > Christopher M. Topinka > > NLM-BHIRT Predoctoral Fellow in Computer Science > > 113 Life Sciences Center > > University of Missouri > > Columbia, MO 65211 > > (573)-823-0616 > > cmt...@mi... > > -- Christopher M. Topinka NLM-BHIRT Predoctoral Fellow in Computer Science 113 Life Sciences Center University of Missouri Columbia, MO 65211 (573)-823-0616 cmt...@mi... |
×
Want the latest updates on software, tech news, and AI?
Get latest updates about software, tech news, and AI from SourceForge directly in your inbox once a month.
Thanks for helping keep SourceForge clean.
X