gusdev-gusdev

[GUSDEV] Build failed - couldn't install GUS

[chawla <ch...@bi...>]

Hi
I get the following error while installing gus schema , after following 
all the steps given in your document.

BUILD FAILED
>  >/database/gusdb/GUS/project_home/install/build.xml:28: The following error
>  >occurred while executing this line:
>  >/database/gusdb/GUS/project_home/GUS/build.xml:92: java.io.IOException: Error
>  >executing SQL: '
>  >CREATE SCHEMA TESSVer' Error: ERROR: schema "tessver" already exists
>  >


I do this on ubuntu 10.04
could anyone please look at this and give a possible solution, it is 
really urgent.
Thanks
Konika

Re: [GUSDEV] Build failed - couldn't install GUS

[Chris S. <sto...@pc...>]

Dear Konika,
Sorry for not replying earlier. I'll ask around and see if we can get some suggestions for you.
Cheers,
Chris

Chris Stoeckert, Ph.D.
Research Professor, Dept. of Genetics
1415 Blockley Hall, Center for Bioinformatics
423 Guardian Dr., University of Pennsylvania
Philadelphia, PA 19104
Ph: 215-573-4409 FAX: 215-573-3111
http://www.cbil.upenn.edu


On Apr 17, 2011, at 6:28 PM, chawla wrote:

> Hi
> I get the following error while installing gus schema , after following 
> all the steps given in your document.
> 
> BUILD FAILED
>>> /database/gusdb/GUS/project_home/install/build.xml:28: The following error
>>> occurred while executing this line:
>>> /database/gusdb/GUS/project_home/GUS/build.xml:92: java.io.IOException: Error
>>> executing SQL: '
>>> CREATE SCHEMA TESSVer' Error: ERROR: schema "tessver" already exists
>>> 
> 
> 
> I do this on ubuntu 10.04
> could anyone please look at this and give a possible solution, it is 
> really urgent.
> Thanks
> Konika
> 
> ------------------------------------------------------------------------------
> Benefiting from Server Virtualization: Beyond Initial Workload 
> Consolidation -- Increasing the use of server virtualization is a top
> priority.Virtualization can reduce costs, simplify management, and improve 
> application availability and disaster protection. Learn more about boosting 
> the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev

Re: [GUSDEV] Build failed - couldn't install GUS

[Rodrigo J. <jar...@gm...>]

Dear Konika,

I think your problem could be solved with the parameters -Xmx and -Xms in
java (JRE). But, I don't know where you put this in the scripts of GUS.
Maybe Dr. Chris know.  I hope I have helped you. (sorry for my english!)

Regards,
Rodrigo Jardim

2011/4/27 Chris Stoeckert <sto...@pc...>

> Dear Konika,
> Sorry for not replying earlier. I'll ask around and see if we can get some
> suggestions for you.
> Cheers,
> Chris
>
> Chris Stoeckert, Ph.D.
>
> Research Professor, Dept. of Genetics
>
> 1415 Blockley Hall, Center for Bioinformatics
>
> 423 Guardian Dr., University of Pennsylvania
>
> Philadelphia, PA 19104
>
> Ph: 215-573-4409 FAX: 215-573-3111
>
> http://www.cbil.upenn.edu
>
>
> On Apr 17, 2011, at 6:28 PM, chawla wrote:
>
> Hi
> I get the following error while installing gus schema , after following
> all the steps given in your document.
>
> BUILD FAILED
>
> /database/gusdb/GUS/project_home/install/build.xml:28: The following error
>
> occurred while executing this line:
>
> /database/gusdb/GUS/project_home/GUS/build.xml:92: java.io.IOException:
> Error
>
> executing SQL: '
>
> CREATE SCHEMA TESSVer' Error: ERROR: schema "tessver" already exists
>
>
>
>
> I do this on ubuntu 10.04
> could anyone please look at this and give a possible solution, it is
> really urgent.
> Thanks
> Konika
>
>
> ------------------------------------------------------------------------------
> Benefiting from Server Virtualization: Beyond Initial Workload
> Consolidation -- Increasing the use of server virtualization is a top
> priority.Virtualization can reduce costs, simplify management, and improve
> application availability and disaster protection. Learn more about boosting
>
> the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>
>
>
>
> ------------------------------------------------------------------------------
> WhatsUp Gold - Download Free Network Management Software
> The most intuitive, comprehensive, and cost-effective network
> management toolset available today.  Delivers lowest initial
> acquisition cost and overall TCO of any competing solution.
> http://p.sf.net/sfu/whatsupgold-sd
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>
>


-- 
Atc,
Rodrigo Jardim
jar...@gm...

Re: [GUSDEV] Build failed - couldn't install GUS

[Chris S. <sto...@pc...>]

Dear Rodrigo, thank you for your suggestion.

Dear Konika, I also got this feedback:
> I suggest dropping all the schemas and tables and starting fresh (being sure that the correct database is configured and doesn't have data). The following is what I use to recycle a database for GUS a install.
> 
> 
> drop user APIDB cascade;
> drop user CORE cascade;
> drop user COREVER cascade;
> drop user DOTS cascade;
> drop user DOTSVER cascade;
> drop user PROT cascade;
> drop user PROTVER cascade;
> drop user RAD cascade;
> drop user RADVER cascade;
> drop user SRES cascade;
> drop user SRESVER cascade;
> drop user STUDY cascade;
> drop user STUDYVER cascade;
> drop user TESS cascade;
> drop user TESSVER cascade;
> DROP ROLE GUS_W;
> DROP ROLE GUS_R;

Chris

On Apr 27, 2011, at 10:38 AM, Rodrigo Jardim wrote:

> Dear Konika,
> 
> I think your problem could be solved with the parameters -Xmx and -Xms in java (JRE). But, I don't know where you put this in the scripts of GUS. Maybe Dr. Chris know.  I hope I have helped you. (sorry for my english!) 
> 
> Regards,
> Rodrigo Jardim
> 
> 2011/4/27 Chris Stoeckert <sto...@pc...>
> Dear Konika,
> Sorry for not replying earlier. I'll ask around and see if we can get some suggestions for you.
> Cheers,
> Chris
> 
> Chris Stoeckert, Ph.D.
> Research Professor, Dept. of Genetics
> 1415 Blockley Hall, Center for Bioinformatics
> 423 Guardian Dr., University of Pennsylvania
> Philadelphia, PA 19104
> Ph: 215-573-4409 FAX: 215-573-3111
> http://www.cbil.upenn.edu
> 
> 
> On Apr 17, 2011, at 6:28 PM, chawla wrote:
> 
>> Hi
>> I get the following error while installing gus schema , after following 
>> all the steps given in your document.
>> 
>> BUILD FAILED
>>>> /database/gusdb/GUS/project_home/install/build.xml:28: The following error
>>>> occurred while executing this line:
>>>> /database/gusdb/GUS/project_home/GUS/build.xml:92: java.io.IOException: Error
>>>> executing SQL: '
>>>> CREATE SCHEMA TESSVer' Error: ERROR: schema "tessver" already exists
>>>> 
>> 
>> 
>> I do this on ubuntu 10.04
>> could anyone please look at this and give a possible solution, it is 
>> really urgent.
>> Thanks
>> Konika
>> 
>> ------------------------------------------------------------------------------
>> Benefiting from Server Virtualization: Beyond Initial Workload 
>> Consolidation -- Increasing the use of server virtualization is a top
>> priority.Virtualization can reduce costs, simplify management, and improve 
>> application availability and disaster protection. Learn more about boosting 
>> the value of server virtualization. http://p.sf.net/sfu/vmware-sfdev2dev
>> _______________________________________________
>> Gusdev-gusdev mailing list
>> Gus...@li...
>> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
> 
> 
> ------------------------------------------------------------------------------
> WhatsUp Gold - Download Free Network Management Software
> The most intuitive, comprehensive, and cost-effective network
> management toolset available today.  Delivers lowest initial
> acquisition cost and overall TCO of any competing solution.
> http://p.sf.net/sfu/whatsupgold-sd
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
> 
> 
> 
> 
> -- 
> Atc,
> Rodrigo Jardim
> jar...@gm...
> 
> 
> ------------------------------------------------------------------------------
> WhatsUp Gold - Download Free Network Management Software
> The most intuitive, comprehensive, and cost-effective network 
> management toolset available today.  Delivers lowest initial 
> acquisition cost and overall TCO of any competing solution.
> http://p.sf.net/sfu/whatsupgold-sd_______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev