gusdev-gusdev

[GUSDEV] Community plugins

[Alberto D. <da...@io...>]

I really enjoyed to find this page:

http://www.gusdb.org/wiki/index.php/How%20we%20built%20TheileriaDB.org

but could not find these plugins :

GUS::Community::Plugin::InsertInterproDomainDbs

GUS::Community::Plugin::MakeGenesFromAlignments

GUS::Community::Plugin::InsertInterproscanResults

Where I should look for them ?

Yet on the community plugins, trying to run this one got a version error:

[user@localhost log]$ ga +create GUS::Community::Plugin::LoadPfam
FATAL: Database version does not match required version for Plugin.
Database Version: 3.5    Plugin Version: HASH(0x120e7b0)

How should one debug this ?

I am using (PostgreSQL) 8.2.2 and Linux FC5 x86_64 on an AMD64 server.

Thanks, Alberto

Re: [GUSDEV] Community plugins

[John I. <io...@pc...>]

Alberto,

Sorry, I forgot to check in those three plugins.  They've now been  
added to the repository, so do an "svn update" and they'll be in  
Community/plugin/perl.

John


On May 7, 2007, at 3:37 PM, Alberto Davila wrote:

> I really enjoyed to find this page:
>
> http://www.gusdb.org/wiki/index.php/How%20we%20built%20TheileriaDB.org
>
> but could not find these plugins :
>
> GUS::Community::Plugin::InsertInterproDomainDbs
>
> GUS::Community::Plugin::MakeGenesFromAlignments
>
> GUS::Community::Plugin::InsertInterproscanResults
>
> Where I should look for them ?
>
> Yet on the community plugins, trying to run this one got a version  
> error:
>
> [user@localhost log]$ ga +create GUS::Community::Plugin::LoadPfam
> FATAL: Database version does not match required version for Plugin.
> Database Version: 3.5    Plugin Version: HASH(0x120e7b0)
>
> How should one debug this ?
>
> I am using (PostgreSQL) 8.2.2 and Linux FC5 x86_64 on an AMD64 server.
>
> Thanks, Alberto
>
> ---------------------------------------------------------------------- 
> ---
> This SF.net email is sponsored by DB2 Express
> Download DB2 Express C - the FREE version of DB2 express and take
> control of your XML. No limits. Just data. Click to get it now.
> http://sourceforge.net/powerbar/db2/
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev

Re: [GUSDEV] Community plugins

[Alberto D. <da...@io...>]

Dear John,

Thanks for this !

I wonder this plugin "GUS::Supported::UnflattenBioperlFeatures" might 
need to be loaded to the SVN site too ? I cannot find it ...

Thanks and kind regards, Alberto


John Iodice wrote:
> Alberto,
> 
> Sorry, I forgot to check in those three plugins.  They've now been added 
> to the repository, so do an "svn update" and they'll be in 
> Community/plugin/perl.
> 
> John
> 
> 
> On May 7, 2007, at 3:37 PM, Alberto Davila wrote:
> 
>> I really enjoyed to find this page:
>>
>> http://www.gusdb.org/wiki/index.php/How%20we%20built%20TheileriaDB.org
>>
>> but could not find these plugins :
>>
>> GUS::Community::Plugin::InsertInterproDomainDbs
>>
>> GUS::Community::Plugin::MakeGenesFromAlignments
>>
>> GUS::Community::Plugin::InsertInterproscanResults
>>
>> Where I should look for them ?
>>
>> Yet on the community plugins, trying to run this one got a version error:
>>
>> [user@localhost log]$ ga +create GUS::Community::Plugin::LoadPfam
>> FATAL: Database version does not match required version for Plugin.
>> Database Version: 3.5    Plugin Version: HASH(0x120e7b0)
>>
>> How should one debug this ?
>>
>> I am using (PostgreSQL) 8.2.2 and Linux FC5 x86_64 on an AMD64 server.
>>
>> Thanks, Alberto
>>

Re: [GUSDEV] Community plugins

[Steve F. <sfi...@pc...>]

oops, indeed i had not added this file to SVN.

i just did.

it is in $PROJECT_HOME/GUS/Supported/lib/perl

steve

Alberto Davila wrote:
> Dear John,
>
> Thanks for this !
>
> I wonder this plugin "GUS::Supported::UnflattenBioperlFeatures" might 
> need to be loaded to the SVN site too ? I cannot find it ...
>
> Thanks and kind regards, Alberto
>
>
> John Iodice wrote:
>   
>> Alberto,
>>
>> Sorry, I forgot to check in those three plugins.  They've now been added 
>> to the repository, so do an "svn update" and they'll be in 
>> Community/plugin/perl.
>>
>> John
>>
>>
>> On May 7, 2007, at 3:37 PM, Alberto Davila wrote:
>>
>>     
>>> I really enjoyed to find this page:
>>>
>>> http://www.gusdb.org/wiki/index.php/How%20we%20built%20TheileriaDB.org
>>>
>>> but could not find these plugins :
>>>
>>> GUS::Community::Plugin::InsertInterproDomainDbs
>>>
>>> GUS::Community::Plugin::MakeGenesFromAlignments
>>>
>>> GUS::Community::Plugin::InsertInterproscanResults
>>>
>>> Where I should look for them ?
>>>
>>> Yet on the community plugins, trying to run this one got a version error:
>>>
>>> [user@localhost log]$ ga +create GUS::Community::Plugin::LoadPfam
>>> FATAL: Database version does not match required version for Plugin.
>>> Database Version: 3.5    Plugin Version: HASH(0x120e7b0)
>>>
>>> How should one debug this ?
>>>
>>> I am using (PostgreSQL) 8.2.2 and Linux FC5 x86_64 on an AMD64 server.
>>>
>>> Thanks, Alberto
>>>
>>>       
>
> -------------------------------------------------------------------------
> This SF.net email is sponsored by DB2 Express
> Download DB2 Express C - the FREE version of DB2 express and take
> control of your XML. No limits. Just data. Click to get it now.
> http://sourceforge.net/powerbar/db2/
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>