gusdev-gusdev

[GUSDEV] path/env config files in gus

[<mro...@cs...>]

Hello folks;

We have Gus 3.5 installed and have been able to to load the taxon data,
now while trying to use InsertSequenceFeatures.pl which uses BioPerl, we
have the following problem:

We have 2 different versions of Perl, and Bioperl is installed in a
different computer, I have been looking for the config files that Gus use=
s
to look for Bioperl.

I found and modified:
 $GUS_HOME/config/install.pro

but it seems that there are other file(s) that need to be modified

Does anybody know where they are?


Cheers,
Michael Robinson
Bioinformatics Research Group (BioRG)
Florida International University
Miami FL 33199

Re: [GUSDEV] path/env config files in gus

[Steve F. <sfi...@pc...>]

michael-

gus gets its bioperl from the standard perl location.   you install 
bioperl using cpan, and then it is available in the regular perl path.

steve

mro...@cs... wrote:
> Hello folks;
>
> We have Gus 3.5 installed and have been able to to load the taxon data,
> now while trying to use InsertSequenceFeatures.pl which uses BioPerl, we
> have the following problem:
>
> We have 2 different versions of Perl, and Bioperl is installed in a
> different computer, I have been looking for the config files that Gus uses
> to look for Bioperl.
>
> I found and modified:
>  $GUS_HOME/config/install.pro
>
> but it seems that there are other file(s) that need to be modified
>
> Does anybody know where they are?
>
>
> Cheers,
> Michael Robinson
> Bioinformatics Research Group (BioRG)
> Florida International University
> Miami FL 33199
>
>
>
>
> -------------------------------------------------------------------------
> Take Surveys. Earn Cash. Influence the Future of IT
> Join SourceForge.net's Techsay panel and you'll get the chance to share your
> opinions on IT & business topics through brief surveys -- and earn cash
> http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>