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From: John F F. I. <fl...@cs...> - 2006-05-02 14:03:39
|
Hiya folks! This is John Flynn from the Florida International University
School of Computer Science. We are trying to build GUSdb and are running
into issues.
Apologies if anyone sees this twice, but I opened a bugzilla bug and no
one has responded, so I'm assuming no one is listening over there.
Hopefully someone here can help us.
I read the list through archives, so if anyone responds, please CC me as
well as the list so I see the message sooner. Thanks!
Basically, the GUS build process fails with numerous compilation errors.
I ensured all the requirements were met, set up the database, and set up
the configuration file as follows:
==begin configuration file snippet==
dbVendor=Postgres
dbiDsn=dbi:Pg:dbname=gusdb;host=localhost
jdbcDsn=jdbc:postgresql://localhost/gusdb
# Login and Password to the RDBMS
databaseLogin=gusdb
databasePassword=<password here>
# Username, group, and project info from the relevant Core tables
userName=dba
group=dba
project=Database administration
tablespace=GUS
==End configuration file snippet==
Relevant software versions follow:
CentOS 4.3
J2SE 1.5
Ant 1.6.5
Postgresql 7.4
Perl 5.8.5 with required modules
Error output follows:
[echo] Installing GUS/Model
[javac] Compiling 1260 source files to
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/classes
[javac]
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:78:
cannot find symbol
[javac] symbol : class notdefyet
[javac] location: class org.gusdb.model.Core.Algorithm_Row
[javac] public void setModificationDate (notdefyet value)
[javac] ^
[javac]
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:83:
cannot find symbol
[javac] symbol : class notdefyet
[javac] location: class org.gusdb.model.Core.Algorithm_Row
[javac] public notdefyet getModificationDate () { return
(notdefyet)get_Attribute("modification_date"); }
[javac] ^
[javac]
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:78:
cannot find symbol
[javac] symbol : class notdefyet
[javac] location: class org.gusdb.model.Core.ProjectInfo_Row
[javac] public void setModificationDate (notdefyet value)
[javac] ^
[javac]
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:83:
cannot find symbol
[javac] symbol : class notdefyet
[javac] location: class org.gusdb.model.Core.ProjectInfo_Row
[javac] public notdefyet getModificationDate () { return
(notdefyet)get_Attribute("modification_date"); }
[javac] ^
[javac]
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:54:
cannot find symbol
[javac] symbol : class notdefyet
[javac] location: class org.gusdb.model.Core.AlgorithmInvocation_Row
[javac] public void setStartTime (notdefyet value)
[javac] ^
[javac]
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:59:
cannot find symbol
[javac] symbol : class notdefyet
[javac] location: class org.gusdb.model.Core.AlgorithmInvocation_Row
[javac] public notdefyet getStartTime () { return
(notdefyet)get_Attribute("start_time"); }
[javac] ^
....snipped; this goes on with similar errors for many pages...
[javac] ^
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 100 errors
BUILD FAILED
/home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:28: The
following
error occurred while executing this line:
/home/acrl-storage-1/gusdb/GUS/project_home/GUS/build.xml:99: The following
error occurred while executing this line:
/home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:259: The
following error occurred while executing this line:
/home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:278: Compile
failed; see the compiler error output for details.
Total time: 18 seconds
--
John Flynn fl...@cs...
=========================================================
Systems and Network Administration /\_/\
School of Computer Science ( O.O )
Florida International University > <
|
|
From: Steve F. <sfi...@pc...> - 2006-05-02 15:19:06
|
john-
as you might know gus provides a perl and a java object layer. each
gus table is represented by a perl object and by a java object.
part of the intall process is a code-generation step that generates 3
perl files and 3 java files per gus table.
then, after that, the install compiles the generated java files.
this compile error is during that compile.
it means that the code generation step didn't work right. in
particular, what happened is that the code generator did not
successfully get info from postgresql on what the type of the
Core.Algorithm column is.
i'm not certain, but, i think this is brought about when you have a
correct list of all the gus tables and views is core.tableinfo (which is
where the code-generator looks to find out what tables exist), but, that
the actual tables are not accessible to the code generator. this
sometimes happens because of permissions. so, you need to make sure
that Core.Algorithm is defined and accessible.
steve
John F Flynn III wrote:
> Hiya folks! This is John Flynn from the Florida International
> University School of Computer Science. We are trying to build GUSdb
> and are running into issues.
>
> Apologies if anyone sees this twice, but I opened a bugzilla bug and
> no one has responded, so I'm assuming no one is listening over there.
> Hopefully someone here can help us.
>
> I read the list through archives, so if anyone responds, please CC me
> as well as the list so I see the message sooner. Thanks!
>
> Basically, the GUS build process fails with numerous compilation errors.
>
>
> I ensured all the requirements were met, set up the database, and set
> up the configuration file as follows:
>
> ==begin configuration file snippet==
> dbVendor=Postgres
> dbiDsn=dbi:Pg:dbname=gusdb;host=localhost
> jdbcDsn=jdbc:postgresql://localhost/gusdb
>
> # Login and Password to the RDBMS
>
> databaseLogin=gusdb
> databasePassword=<password here>
>
> # Username, group, and project info from the relevant Core tables
>
> userName=dba
> group=dba
> project=Database administration
>
> tablespace=GUS
> ==End configuration file snippet==
>
> Relevant software versions follow:
>
> CentOS 4.3
> J2SE 1.5
> Ant 1.6.5
> Postgresql 7.4
> Perl 5.8.5 with required modules
>
> Error output follows:
>
>
> [echo] Installing GUS/Model
> [javac] Compiling 1260 source files to
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/classes
> [javac]
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:78:
>
> cannot find symbol
> [javac] symbol : class notdefyet
> [javac] location: class org.gusdb.model.Core.Algorithm_Row
> [javac] public void setModificationDate (notdefyet value)
> [javac] ^
> [javac]
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:83:
>
> cannot find symbol
> [javac] symbol : class notdefyet
> [javac] location: class org.gusdb.model.Core.Algorithm_Row
> [javac] public notdefyet getModificationDate () { return
> (notdefyet)get_Attribute("modification_date"); }
> [javac] ^
> [javac]
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:78:
>
> cannot find symbol
> [javac] symbol : class notdefyet
> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
> [javac] public void setModificationDate (notdefyet value)
> [javac] ^
> [javac]
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:83:
>
> cannot find symbol
> [javac] symbol : class notdefyet
> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
> [javac] public notdefyet getModificationDate () { return
> (notdefyet)get_Attribute("modification_date"); }
> [javac] ^
> [javac]
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:54:
>
> cannot find symbol
> [javac] symbol : class notdefyet
> [javac] location: class org.gusdb.model.Core.AlgorithmInvocation_Row
> [javac] public void setStartTime (notdefyet value)
> [javac] ^
> [javac]
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:59:
>
> cannot find symbol
> [javac] symbol : class notdefyet
> [javac] location: class org.gusdb.model.Core.AlgorithmInvocation_Row
> [javac] public notdefyet getStartTime () { return
> (notdefyet)get_Attribute("start_time"); }
> [javac] ^
> ....snipped; this goes on with similar errors for many pages...
> [javac] ^
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] 100 errors
>
> BUILD FAILED
> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:28: The
> following
> error occurred while executing this line:
> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/build.xml:99: The
> following
> error occurred while executing this line:
> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:259: The
> following error occurred while executing this line:
> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:278:
> Compile
> failed; see the compiler error output for details.
>
> Total time: 18 seconds
>
|
|
From: John F F. I. <fl...@cs...> - 2006-05-02 17:00:31
|
Hmmm. Is there a way to make the build process more verbose so that I
can find out what exactly is failing?
As far as I can tell, everything seems successful up to the point where
those compilation failures occur.
-John
Steve Fischer wrote:
> john-
>
> as you might know gus provides a perl and a java object layer. each
> gus table is represented by a perl object and by a java object.
>
> part of the intall process is a code-generation step that generates 3
> perl files and 3 java files per gus table.
>
> then, after that, the install compiles the generated java files.
>
> this compile error is during that compile.
>
> it means that the code generation step didn't work right. in
> particular, what happened is that the code generator did not
> successfully get info from postgresql on what the type of the
> Core.Algorithm column is.
>
> i'm not certain, but, i think this is brought about when you have a
> correct list of all the gus tables and views is core.tableinfo (which is
> where the code-generator looks to find out what tables exist), but, that
> the actual tables are not accessible to the code generator. this
> sometimes happens because of permissions. so, you need to make sure
> that Core.Algorithm is defined and accessible.
>
> steve
>
> John F Flynn III wrote:
>
>> Hiya folks! This is John Flynn from the Florida International
>> University School of Computer Science. We are trying to build GUSdb
>> and are running into issues.
>>
>> Apologies if anyone sees this twice, but I opened a bugzilla bug and
>> no one has responded, so I'm assuming no one is listening over there.
>> Hopefully someone here can help us.
>>
>> I read the list through archives, so if anyone responds, please CC me
>> as well as the list so I see the message sooner. Thanks!
>>
>> Basically, the GUS build process fails with numerous compilation errors.
>>
>>
>> I ensured all the requirements were met, set up the database, and set
>> up the configuration file as follows:
>>
>> ==begin configuration file snippet==
>> dbVendor=Postgres
>> dbiDsn=dbi:Pg:dbname=gusdb;host=localhost
>> jdbcDsn=jdbc:postgresql://localhost/gusdb
>>
>> # Login and Password to the RDBMS
>>
>> databaseLogin=gusdb
>> databasePassword=<password here>
>>
>> # Username, group, and project info from the relevant Core tables
>>
>> userName=dba
>> group=dba
>> project=Database administration
>>
>> tablespace=GUS
>> ==End configuration file snippet==
>>
>> Relevant software versions follow:
>>
>> CentOS 4.3
>> J2SE 1.5
>> Ant 1.6.5
>> Postgresql 7.4
>> Perl 5.8.5 with required modules
>>
>> Error output follows:
>>
>>
>> [echo] Installing GUS/Model
>> [javac] Compiling 1260 source files to
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/classes
>> [javac]
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:78:
>>
>> cannot find symbol
>> [javac] symbol : class notdefyet
>> [javac] location: class org.gusdb.model.Core.Algorithm_Row
>> [javac] public void setModificationDate (notdefyet value)
>> [javac] ^
>> [javac]
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:83:
>>
>> cannot find symbol
>> [javac] symbol : class notdefyet
>> [javac] location: class org.gusdb.model.Core.Algorithm_Row
>> [javac] public notdefyet getModificationDate () { return
>> (notdefyet)get_Attribute("modification_date"); }
>> [javac] ^
>> [javac]
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:78:
>>
>> cannot find symbol
>> [javac] symbol : class notdefyet
>> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
>> [javac] public void setModificationDate (notdefyet value)
>> [javac] ^
>> [javac]
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:83:
>>
>> cannot find symbol
>> [javac] symbol : class notdefyet
>> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
>> [javac] public notdefyet getModificationDate () { return
>> (notdefyet)get_Attribute("modification_date"); }
>> [javac] ^
>> [javac]
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:54:
>>
>> cannot find symbol
>> [javac] symbol : class notdefyet
>> [javac] location: class org.gusdb.model.Core.AlgorithmInvocation_Row
>> [javac] public void setStartTime (notdefyet value)
>> [javac] ^
>> [javac]
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:59:
>>
>> cannot find symbol
>> [javac] symbol : class notdefyet
>> [javac] location: class org.gusdb.model.Core.AlgorithmInvocation_Row
>> [javac] public notdefyet getStartTime () { return
>> (notdefyet)get_Attribute("start_time"); }
>> [javac] ^
>> ....snipped; this goes on with similar errors for many pages...
>> [javac] ^
>> [javac] Note: Some input files use unchecked or unsafe operations.
>> [javac] Note: Recompile with -Xlint:unchecked for details.
>> [javac] 100 errors
>>
>> BUILD FAILED
>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:28: The
>> following
>> error occurred while executing this line:
>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/build.xml:99: The
>> following
>> error occurred while executing this line:
>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:259: The
>> following error occurred while executing this line:
>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:278:
>> Compile
>> failed; see the compiler error output for details.
>>
>> Total time: 18 seconds
>>
--
John Flynn fl...@cs...
=========================================================
Systems and Network Administration /\_/\
School of Computer Science ( O.O )
Florida International University > <
|
|
From: Steve F. <sfi...@pc...> - 2006-05-02 19:08:07
|
have you checked the permissions on the core.algorithm table?
steve
John F Flynn III wrote:
> Hmmm. Is there a way to make the build process more verbose so that I
> can find out what exactly is failing?
>
> As far as I can tell, everything seems successful up to the point
> where those compilation failures occur.
>
> -John
>
> Steve Fischer wrote:
>
>> john-
>>
>> as you might know gus provides a perl and a java object layer. each
>> gus table is represented by a perl object and by a java object.
>>
>> part of the intall process is a code-generation step that generates 3
>> perl files and 3 java files per gus table.
>>
>> then, after that, the install compiles the generated java files.
>>
>> this compile error is during that compile.
>>
>> it means that the code generation step didn't work right. in
>> particular, what happened is that the code generator did not
>> successfully get info from postgresql on what the type of the
>> Core.Algorithm column is.
>>
>> i'm not certain, but, i think this is brought about when you have a
>> correct list of all the gus tables and views is core.tableinfo (which
>> is where the code-generator looks to find out what tables exist),
>> but, that the actual tables are not accessible to the code
>> generator. this sometimes happens because of permissions. so, you
>> need to make sure that Core.Algorithm is defined and accessible.
>>
>> steve
>>
>> John F Flynn III wrote:
>>
>>> Hiya folks! This is John Flynn from the Florida International
>>> University School of Computer Science. We are trying to build GUSdb
>>> and are running into issues.
>>>
>>> Apologies if anyone sees this twice, but I opened a bugzilla bug and
>>> no one has responded, so I'm assuming no one is listening over
>>> there. Hopefully someone here can help us.
>>>
>>> I read the list through archives, so if anyone responds, please CC
>>> me as well as the list so I see the message sooner. Thanks!
>>>
>>> Basically, the GUS build process fails with numerous compilation
>>> errors.
>>>
>>>
>>> I ensured all the requirements were met, set up the database, and
>>> set up the configuration file as follows:
>>>
>>> ==begin configuration file snippet==
>>> dbVendor=Postgres
>>> dbiDsn=dbi:Pg:dbname=gusdb;host=localhost
>>> jdbcDsn=jdbc:postgresql://localhost/gusdb
>>>
>>> # Login and Password to the RDBMS
>>>
>>> databaseLogin=gusdb
>>> databasePassword=<password here>
>>>
>>> # Username, group, and project info from the relevant Core tables
>>>
>>> userName=dba
>>> group=dba
>>> project=Database administration
>>>
>>> tablespace=GUS
>>> ==End configuration file snippet==
>>>
>>> Relevant software versions follow:
>>>
>>> CentOS 4.3
>>> J2SE 1.5
>>> Ant 1.6.5
>>> Postgresql 7.4
>>> Perl 5.8.5 with required modules
>>>
>>> Error output follows:
>>>
>>>
>>> [echo] Installing GUS/Model
>>> [javac] Compiling 1260 source files to
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/classes
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:78:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.Algorithm_Row
>>> [javac] public void setModificationDate (notdefyet value)
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:83:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.Algorithm_Row
>>> [javac] public notdefyet getModificationDate () { return
>>> (notdefyet)get_Attribute("modification_date"); }
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:78:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
>>> [javac] public void setModificationDate (notdefyet value)
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:83:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
>>> [javac] public notdefyet getModificationDate () { return
>>> (notdefyet)get_Attribute("modification_date"); }
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:54:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class
>>> org.gusdb.model.Core.AlgorithmInvocation_Row
>>> [javac] public void setStartTime (notdefyet value)
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:59:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class
>>> org.gusdb.model.Core.AlgorithmInvocation_Row
>>> [javac] public notdefyet getStartTime () { return
>>> (notdefyet)get_Attribute("start_time"); }
>>> [javac] ^
>>> ....snipped; this goes on with similar errors for many pages...
>>> [javac] ^
>>> [javac] Note: Some input files use unchecked or unsafe operations.
>>> [javac] Note: Recompile with -Xlint:unchecked for details.
>>> [javac] 100 errors
>>>
>>> BUILD FAILED
>>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:28:
>>> The following
>>> error occurred while executing this line:
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/build.xml:99: The
>>> following
>>> error occurred while executing this line:
>>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:259: The
>>> following error occurred while executing this line:
>>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:278:
>>> Compile
>>> failed; see the compiler error output for details.
>>>
>>> Total time: 18 seconds
>>>
>
|
|
From: John F F. I. <fl...@cs...> - 2006-05-03 14:13:17
|
Steve Fischer wrote: > have you checked the permissions on the core.algorithm table? Yes, I did. The user gusdb has authorization for it, as expected. This is why I wanted a more verbose build process, so I could see exactly where things are failing. -John -- John Flynn fl...@cs... ========================================================= Systems and Network Administration /\_/\ School of Computer Science ( O.O ) Florida International University > < |
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