gusdev-gusdev

[Gusdev-gusdev] O'Reilly Life Science conference

[Chris S. <sto...@pc...>]

Hi Everyone,
Sept. 1 is the deadline for submissions for presentations at next years 
O'Reilly Life Science Informatics conference 
(https://lists.sourceforge.net/lists/listinfo/mged-ontologies). Angel 
went last year and reported that it was a great place for presenting 
and discussing systems such as GUS. I would like to submit a proposal 
for either a 45 or 90 minute presentation about GUS and our efforts as 
an open source project. The proposal is essentially an abstract 
submitted on-line. What do you all think? Have others gone to this 
meeting (Arnaud?) and would you agree or recommend another format? (see 
http://conferences.oreillynet.com/cs/lsi2004/create/e_sess). WHo is 
thinking of going?

Cheers,
Chris

Re: [Gusdev-gusdev] O'Reilly Life Science conference

[Steve F. <sfi...@pc...>]

Folks-

here are topics i think we might want to cover in a talk about GUS. 
 thought i'd run this by you before i drew up an abstract.

suggestions?

 1. overview
          - applications using GUS so far
          - integrated system: db, schema, app framework, install 
system, wdk
 2. schema
          - the domains it covers
          - normalization
          - strong typing
          - MAGE compliance
          - subclassing
          - sample queries
          - strengths and weaknesses
                - s: completeness
                - s: CVs and strong typing.
                - s: robustness wrt query formulation
                - s: tracking
                - w: lack of modularity
                - w: must use our notion of tracking
          - modularity coming in the future?
          - compare to chado
    3. app framework
          - object layer
          - plugins
          - strengths and weaknesses
               - s: relatively easy to write a plugin
               - s: a number of plugins already available
               - w: doesn't use standards like bioPerl, GFF
               - w: plugins written without an engineering vision or 
standards
     4. wdk
          - show off the massive functionality in Plasmo and epcon
          - describe separation of content from form
          - describe configuration file and queries
     5. installation and documentation
          - install system covers installing schema and software
          - documentation is evolving and improving
          - schema browser



Chris Stoeckert wrote:

> Hi Everyone,
> Sept. 1 is the deadline for submissions for presentations at next 
> years O'Reilly Life Science Informatics conference 
> (https://lists.sourceforge.net/lists/listinfo/mged-ontologies). Angel 
> went last year and reported that it was a great place for presenting 
> and discussing systems such as GUS. I would like to submit a proposal 
> for either a 45 or 90 minute presentation about GUS and our efforts as 
> an open source project. The proposal is essentially an abstract 
> submitted on-line. What do you all think? Have others gone to this 
> meeting (Arnaud?) and would you agree or recommend another format? 
> (see http://conferences.oreillynet.com/cs/lsi2004/create/e_sess). WHo 
> is thinking of going?
>
> Cheers,
> Chris
>
>
>
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