so, chetna- you have the latest CBIL. also get the latest GUS from
the sanger site and that should fix loadblastsimilaritiespk.
as indicated, the rest are under going gus 3.0 upgrades now.
steve
Deborah F. Pinney wrote:
>I used LoadBlastSimilaritiesPK within the last 5 days and the version I
>used is in CVS. You will need to update it as well as two other modules,
>GUS::Common::BulkSimilarity and CBIL::Util::A.
>
>InsertDbRefAndDbRefNASequence has not been tested yet so it may need some
>work. It is scheduled for testing and use within the next week. I'll try
>to remember to send e-mai when it is working and commited to CVS.
>
>The other three plugins are in the process of being updated and tested or
>are obsolete. Dave Barkan can probably comment on those.
>
> Deborah
>
>
>On Wed, 23 Apr 2003, Chetna D. Warade wrote:
>
>
>
>>Hi,
>>
>>
>>I am attaching a document that includes 5 plugins which are either not
>>able to compile or not find some module. Steve, I have downloaded CBIL
>>tar version 3 and tested with the new tar too but still these scripts
>>fail to compile.
>>
>>Following are the 5 plugins:
>>InsertDbRefAndDbRefNASequence <-- I got newer version for this
>>
>>LoadBlastSimilaritiesPK <-- I got newer version for this
>>CopyAASeqGoFuncToProtGoFunc <-- I have latest copy of this
>>DeleteGoPredictions <-- I have latest copy of this
>>MakeGoPredictions <-- I have latest copy of this
>>
>>1) I get a feeling that problem could be an env variable or absence of
>>some module. In InsertDbRefAndDbRefNASequence it is complaining about a
>>package.
>>
>>2) The way I use these pluings for e.g. is:
>>
>>ga GUS::Common::Plugin::InsertDbRefAndDbRefNASequence --usage
>>or
>>ga GUS::GOPredict::Plugin::MakeGoPredictions --usage
>>
>>Just want to make sure that I use correct syntax.
>>
>>Hope to hear from you all,
>>Thanks,
>>Chetna
>>
>>
>>
>>
>
>
>
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