gusdev-gusdev

[Gusdev-gusdev] PfamEntry table population

[Arnaud K. <ax...@sa...>]

Hi

Is there a gusdev GA plugin to populate Pfam entries into gusdev ?

cheers
Arnaud

--
Arnaud Kerhornou

The Wellcome Trust Sanger Institute
The Pathogen Sequencing Unit
Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
Work: +44 (0) 1223 494955
Fax:  +44 (0) 1223 494919

Re: [Gusdev-gusdev] PfamEntry table population

[steve f. <st...@SN...>]

its called InsertNewExternalSequences

contact me if you need more details

steve

Arnaud Kerhornou wrote:

> Hi
>
> Is there a gusdev GA plugin to populate Pfam entries into gusdev ?
>
> cheers
> Arnaud
>
> -- 
> Arnaud Kerhornou
>
> The Wellcome Trust Sanger Institute
> The Pathogen Sequencing Unit
> Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
> Work: +44 (0) 1223 494955
> Fax:  +44 (0) 1223 494919
>
>
>
>
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Re: [Gusdev-gusdev] PfamEntry table population

[<cra...@SN...>]

steve fischer wrote:
> 
> its called InsertNewExternalSequences
> 

This is incorrect; Arnaud was asking about the population of the 'PfamEntry'
table, and I don't believe that InsertNewExternalSequences can be used to 
populate this table.  I wrote a plugin to do this, but I don't see it in the 
tar file I just sent to you guys, which probably just means that it needs 
updating and moving into the correct directory (Objects/GA_plugins versus 
GA_plugins)  I'll look into this and get back to you.

Jonathan

-- 
Jonathan Crabtree
Center for Bioinformatics, University of Pennsylvania
1406 Blockley Hall, 423 Guardian Drive Philadelphia, PA 19104-6021
215-573-3115