"Kumar, Sanjeev" <San...@ng...> writes:
>
> I am getting 'out of memory' error while loading the Taxonomy data.
> I remember Jian Lu got this error earlier, but I couldn't find any
> solution in the archive.
> Pl. suggest me to resolve the issue.
I recently ran into this issue as well. I got the same error that was
mentioned in the list archives, which looks something like
this:
Out of memory!
Issuing rollback() for database handle being DESTROY'd without explicit disconnect(), <MERGED> line xxx.
Issuing rollback() for database handle being DESTROY'd without explicit disconnect(), <MERGED> line xxx.
and the line number will vary depending on what *.dmp files you use.
What was happening was that in the merged.dmp file at line xxx was the
entry:
88745 | 87265 |
and this entry would cause LoadTaxon to run endlessly until
the memory on my machine ran out. I deleted the line
from merged.dmp and LoadTaxon would run successfully.
Without investigating "why" this line in merged.dmp would cause
this problem, I can think of two possible reasons:
This line is an error/bug on NCBI's part.
This line illustrates a case that the author(s) of LoadTaxon
never considered.
I look forward to other peoples comments.
Josef
Josef Jurek, Ph.D.
Daphne Preuss Laboratory
Molecular Genetics and Cell Biology
The University of Chicago
ju...@cs...
voice: (773) 702-9559
fax: (773) 702-6648
|
