Hey Terry, sorry for not getting back sooner on this.
The classes have all been merged into one table, 'GOAssociation,' which
makes associations between a generic row in the database (usually
representing a sequence, and indicated by the 'table_id' and 'row_id'
attributes in the GOAssociation table) and a GO Term.
I'm not sure what the plugin uses those tables for, let me take a look and
make sure it's nothing out of the ordinary. Generally, converting to GUS
3.0 is a matter of simply understanding the schema and a few of the new
conventions that plugins follow. I will send you a document (if for
nothing else than posterity) that has general details about the process.
Dave
On Wed, 1 Oct 2003, Terry Clark wrote:
> I just stumbled into some modules missing in
> the current GUS distribution that are
> used by plugin LoadGeneFeaturesFromXML.pm :
>
> require GUS::Model::DoTS::AASequenceGOProcess;
> require GUS::Model::DoTS::AASequenceGOComponent;
> require GUS::Model::DoTS::AASequenceGOFunction;
>
> require GUS::Model::DoTS::ProteinGOProcess;
> require GUS::Model::DoTS::ProteinGOComponent;
> require GUS::Model::DoTS::ProteinGOFunction;
>
> It looks like they have not been converted to GUS 3.0 yet
> (with a strong hint in TASK_GoAnnotation(): ### NOTE: NOT YET UPDATED).
> I'm willing to take a shot at updating these, but I don't
> know where to find them (and what's involved in converting
> 2.0 to 3.0 so I should be careful about volunteering ;-)
>
> Terry
>
>
>
>
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