No, currently there is no such alternative or at least no alternative
that we have developed at CBIL, as the RADSA is working very well for us.
Please see http://www.cbil.upenn.edu/RAD/php/RAD-installation.php?, bullet
point 2 for data loading pipeline into RAD.
In some special cases (like data coming out of particular software), some
of the annotation can be automated via plugins that we provide (precisely
the Assay to Quantification or "Module I"), as these particular software
packages provide files that can be used to automate part of the process.
For other parts, like Module II (annotation about experimental design) and
Module III (annotation like biomaterials and protocols), since the info
doesn't typically resides in files, but it's in the lab notebook of the
person who did the bench work, the Study Annotator provides a suite of
webforms to facilitate entering this info.
Elisabetta
---
On Wed, 16 Nov 2005, Amruta Joshi wrote:
>
> Is there any alternative software that does the job similar to the
> StudyAnnotator (viz. interface for annotating and depositing microarray
> data into GUS)?
>
> thanks,
> Amruta
>
>
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