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Re: [gridsam-discuss] Log file
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From: Vesselin N. <ve...@do...> - 2007-03-22 12:11:14
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Mark, I should have pointed out, I have never used the AHE in OMII. All my tests use directly installed/managed GridSAM instance. It's worth checking with the AHE developers what exactly goes on when AHE instantiates/manages a GridSAM instance with regard to any security credentials. -Vesso Mark HB wrote: >Vesselin, > >Yes, sorry about that. The error is exactly the same no matter which >node I send the job to, and hence I just grabbed the first log file to hand. > >Cheers >Mark > > > Novov wrote: > > >>Mark, >> >>I recently had this exact error, but, in my case missing proxy >>credentials were definitely >>the cause of it. >> >>I am also a bit confused: >> >>- the pasted "GridSAM state is . . ." below indicates the job was >>attempted on the 27th March >>and it was Not submitted because no connection was established with >>grid-compute.leeds.ac.uk. >>- the gram_job_mgr_9570.log entries are from 13th March and indicate >>that job Was at least submitted. >>- the catalina.out section below also indicates a job Was submitted, the >>staging-in of input files was successful >>but failed at staging-out(after execution) phase and the machine is >>grid-data.man.ac.uk. >> >>regards >>Vesso >> >>Mark HB wrote: >> >> >> >> >>>Dear GRIDSam list, >>> >>>I am attempting to run an application on the NGS using AHE/GRIDSam >>>bundled with the OMII-stack. I get the following error when trying to >>>run the job: >>> >>>GridSAM state is: failed >>> Time: 2007-03-22T08:23:48.172Z >>> Description: cannot initialise working directory: Could not connect >>>to FTP server on"gsiftp://grid-compute.leeds.ac.uk/ - User globus >>>credential is required but not specified in the context". >>> >>>I can assure you that I have both a GRIDSam proxy certificate and proxy >>>user certificate running. >>> >>>The GRAM log file found on the NGS machine can be found here: >>>http://igrid-ext.cryst.bbk.ac.uk/gram_job_mgr_9570.log >>> >>>The main point in this log is "GRAM_SCRIPT_ERROR = 26" >>> >>>ABelow you will find the output produced in the catalina.log file. >>> >>>Has anyone come across this error before? I would appreciate any comments? >>> >>>Cheers >>>Mark >>> >>>- principal obtained from Axis transport - >>>EMA...@ma..., >>>CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >>>- principal obtained from Axis transport - >>>EMA...@ma..., >>>CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >>>- state {pending} reached >>>WseSourceProcessor: No destinations to route the event >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fec threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7feb threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>- principal obtained from Axis transport - >>>EMA...@ma..., >>>CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >>>- principal obtained from Axis transport - >>>EMA...@ma..., >>>CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fea threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>- state {staging-in} reached >>>WseSourceProcessor: No destinations to route the event >>>- Proxy Credentials received : >>>/C=UK/O=eScience/OU=Imperial/L=LeSC/CN=mark halling-brown >>>- basic authentication scheme selected >>>- staging (copy) file >>>http://test:to...@ig...:18080/filestage/551218202107278041688/datPlain12 >>> >>>-> gsiftp://grid-data.man.ac.uk/551218202107278041688/datPlain12 >>>- basic authentication scheme selected >>>- total byte write 2508 >>>- datPlain12 staged >>>- state {staged-in} reached >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe9 threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>- executing groovy script >>>org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy >>>- executed groovy script >>>org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe8 threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>- RSL &( arguments = "-f" "datPlain12" )( directory = >>>"551218202107278041688" )( executable = "/home/ngs0386/bin/cimmsim" )( >>>stderr = "stderr.txt" )( stdout = "stdout.txt" )( count = "1" )( jobType >>>= "mpi" ) >>>- Submitting globus job to grid-data.man.ac.uk/jobmanager-pbs >>>- Globus job submitted https://grid-data.man.ac.uk:64304/25112/1174414409/ >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe7 threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>WseSourceProcessor: No destinations to route the event >>>- globus job is active - https://grid-data.man.ac.uk:64304/25112/1174414409/ >>>- state {active} reached >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe6 threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>- state {staging-out} reached >>>WseSourceProcessor: No destinations to route the event >>>- staging file >>>gsiftp://grid-data.man.ac.uk/551218202107278041688/stdout.txt -> >>>webdav://test:to...@ig...:18080/filestage/551218202107278041688/stdout.txt >>>[Fatal Error] :-1:-1: Premature end of file. >>>- total byte write 4353 >>>[Fatal Error] :-1:-1: Premature end of file. >>>- stdout.txt staged >>>- staging file >>>gsiftp://grid-data.man.ac.uk/551218202107278041688/stderr.txt -> >>>webdav://test:to...@ig...:18080/filestage/551218202107278041688/stderr.txt >>>[Fatal Error] :-1:-1: Premature end of file. >>>- total byte write 194 >>>[Fatal Error] :-1:-1: Premature end of file. >>>- stderr.txt staged >>>- staging file >>>gsiftp://grid-data.man.ac.uk/551218202107278041688/_th-details.out -> >>>webdav://test:to...@ig...:18080/filestage/551218202107278041688/_th-details.out >>>[Fatal Error] :-1:-1: Premature end of file. >>>- total byte write 32075 >>>[Fatal Error] :-1:-1: Premature end of file. >>>- _th-details.out staged >>>- state {staged-out} reached >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe5 threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>>- state {done} reached >>>- done 1174414390889 1174414391097 1174414406236 1174414430046 >>>1174414449984 1174414470047 1174414482532 1174414482572 >>>WseSourceProcessor: No destinations to route the event >>>- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe4 threw >>>a JobExecutionException: >>>org.quartz.JobExecutionException >>> at >>>org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >>> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >>> at >>>org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >>> >>> >>> >>> >>> >>> >>> >>> >> >> >> > > > > -- ----------------------------------------------------------------- Vesso A. Novov -- Research Assistant -- ----------------------------------------------------------------- London e-Science Centre http://www.lesc.doc.ic.ac.uk Imperial College London, Department of Computing 180 Queen's Gate, London SW7 2RH, UK tel: +44 (0)207-594-8399 fax: +44 (0)207-581-8024 ----------------------------------------------------------------- |
