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Re: [gridsam-discuss] Log file
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From: Mark HB <m.h...@ma...> - 2007-03-22 12:02:10
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Vesselin, Yes, sorry about that. The error is exactly the same no matter which node I send the job to, and hence I just grabbed the first log file to hand. Cheers Mark Novov wrote: > Mark, > > I recently had this exact error, but, in my case missing proxy > credentials were definitely > the cause of it. > > I am also a bit confused: > > - the pasted "GridSAM state is . . ." below indicates the job was > attempted on the 27th March > and it was Not submitted because no connection was established with > grid-compute.leeds.ac.uk. > - the gram_job_mgr_9570.log entries are from 13th March and indicate > that job Was at least submitted. > - the catalina.out section below also indicates a job Was submitted, the > staging-in of input files was successful > but failed at staging-out(after execution) phase and the machine is > grid-data.man.ac.uk. > > regards > Vesso > > Mark HB wrote: > > >> Dear GRIDSam list, >> >> I am attempting to run an application on the NGS using AHE/GRIDSam >> bundled with the OMII-stack. I get the following error when trying to >> run the job: >> >> GridSAM state is: failed >> Time: 2007-03-22T08:23:48.172Z >> Description: cannot initialise working directory: Could not connect >> to FTP server on"gsiftp://grid-compute.leeds.ac.uk/ - User globus >> credential is required but not specified in the context". >> >> I can assure you that I have both a GRIDSam proxy certificate and proxy >> user certificate running. >> >> The GRAM log file found on the NGS machine can be found here: >> http://igrid-ext.cryst.bbk.ac.uk/gram_job_mgr_9570.log >> >> The main point in this log is "GRAM_SCRIPT_ERROR = 26" >> >> ABelow you will find the output produced in the catalina.log file. >> >> Has anyone come across this error before? I would appreciate any comments? >> >> Cheers >> Mark >> >> - principal obtained from Axis transport - >> EMA...@ma..., >> CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >> - principal obtained from Axis transport - >> EMA...@ma..., >> CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >> - state {pending} reached >> WseSourceProcessor: No destinations to route the event >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fec threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7feb threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> - principal obtained from Axis transport - >> EMA...@ma..., >> CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >> - principal obtained from Axis transport - >> EMA...@ma..., >> CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fea threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> - state {staging-in} reached >> WseSourceProcessor: No destinations to route the event >> - Proxy Credentials received : >> /C=UK/O=eScience/OU=Imperial/L=LeSC/CN=mark halling-brown >> - basic authentication scheme selected >> - staging (copy) file >> http://test:to...@ig...:18080/filestage/551218202107278041688/datPlain12 >> >> -> gsiftp://grid-data.man.ac.uk/551218202107278041688/datPlain12 >> - basic authentication scheme selected >> - total byte write 2508 >> - datPlain12 staged >> - state {staged-in} reached >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe9 threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> - executing groovy script >> org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy >> - executed groovy script >> org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe8 threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> - RSL &( arguments = "-f" "datPlain12" )( directory = >> "551218202107278041688" )( executable = "/home/ngs0386/bin/cimmsim" )( >> stderr = "stderr.txt" )( stdout = "stdout.txt" )( count = "1" )( jobType >> = "mpi" ) >> - Submitting globus job to grid-data.man.ac.uk/jobmanager-pbs >> - Globus job submitted https://grid-data.man.ac.uk:64304/25112/1174414409/ >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe7 threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> WseSourceProcessor: No destinations to route the event >> - globus job is active - https://grid-data.man.ac.uk:64304/25112/1174414409/ >> - state {active} reached >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe6 threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> - state {staging-out} reached >> WseSourceProcessor: No destinations to route the event >> - staging file >> gsiftp://grid-data.man.ac.uk/551218202107278041688/stdout.txt -> >> webdav://test:to...@ig...:18080/filestage/551218202107278041688/stdout.txt >> [Fatal Error] :-1:-1: Premature end of file. >> - total byte write 4353 >> [Fatal Error] :-1:-1: Premature end of file. >> - stdout.txt staged >> - staging file >> gsiftp://grid-data.man.ac.uk/551218202107278041688/stderr.txt -> >> webdav://test:to...@ig...:18080/filestage/551218202107278041688/stderr.txt >> [Fatal Error] :-1:-1: Premature end of file. >> - total byte write 194 >> [Fatal Error] :-1:-1: Premature end of file. >> - stderr.txt staged >> - staging file >> gsiftp://grid-data.man.ac.uk/551218202107278041688/_th-details.out -> >> webdav://test:to...@ig...:18080/filestage/551218202107278041688/_th-details.out >> [Fatal Error] :-1:-1: Premature end of file. >> - total byte write 32075 >> [Fatal Error] :-1:-1: Premature end of file. >> - _th-details.out staged >> - state {staged-out} reached >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe5 threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> - state {done} reached >> - done 1174414390889 1174414391097 1174414406236 1174414430046 >> 1174414449984 1174414470047 1174414482532 1174414482572 >> WseSourceProcessor: No destinations to route the event >> - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe4 threw >> a JobExecutionException: >> org.quartz.JobExecutionException >> at >> org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) >> at org.quartz.core.JobRunShell.run(JobRunShell.java:191) >> at >> org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >> >> >> >> >> >> > > -- --------------------------------------------------------------------------- Mark Halling-Brown | Tel: +44-20-7631-6839 Research Associate | Room 359 | Fax: +44-20-7631-6803 School of Crystallography | Birkbeck College | Email: Malet Street | gh...@ma... London WC1E 7HX | ma...@gm... UK | http://people.cryst.bbk.ac.uk/~ghall04 --------------------------------------------------------------------------- |
