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Re: [gridsam-discuss] Log file
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From: Vesselin N. <ve...@do...> - 2007-03-22 11:55:26
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Mark, I recently had this exact error, but, in my case missing proxy credentials were definitely the cause of it. I am also a bit confused: - the pasted "GridSAM state is . . ." below indicates the job was attempted on the 27th March and it was Not submitted because no connection was established with grid-compute.leeds.ac.uk. - the gram_job_mgr_9570.log entries are from 13th March and indicate that job Was at least submitted. - the catalina.out section below also indicates a job Was submitted, the staging-in of input files was successful but failed at staging-out(after execution) phase and the machine is grid-data.man.ac.uk. regards Vesso Mark HB wrote: >Dear GRIDSam list, > >I am attempting to run an application on the NGS using AHE/GRIDSam >bundled with the OMII-stack. I get the following error when trying to >run the job: > >GridSAM state is: failed > Time: 2007-03-22T08:23:48.172Z > Description: cannot initialise working directory: Could not connect >to FTP server on"gsiftp://grid-compute.leeds.ac.uk/ - User globus >credential is required but not specified in the context". > >I can assure you that I have both a GRIDSam proxy certificate and proxy >user certificate running. > >The GRAM log file found on the NGS machine can be found here: >http://igrid-ext.cryst.bbk.ac.uk/gram_job_mgr_9570.log > >The main point in this log is "GRAM_SCRIPT_ERROR = 26" > >ABelow you will find the output produced in the catalina.log file. > >Has anyone come across this error before? I would appreciate any comments? > >Cheers >Mark > >- principal obtained from Axis transport - >EMA...@ma..., >CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >- principal obtained from Axis transport - >EMA...@ma..., >CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >- state {pending} reached >WseSourceProcessor: No destinations to route the event >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fec threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7feb threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >- principal obtained from Axis transport - >EMA...@ma..., >CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >- principal obtained from Axis transport - >EMA...@ma..., >CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fea threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >- state {staging-in} reached >WseSourceProcessor: No destinations to route the event >- Proxy Credentials received : >/C=UK/O=eScience/OU=Imperial/L=LeSC/CN=mark halling-brown >- basic authentication scheme selected >- staging (copy) file >http://test:to...@ig...:18080/filestage/551218202107278041688/datPlain12 > >-> gsiftp://grid-data.man.ac.uk/551218202107278041688/datPlain12 >- basic authentication scheme selected >- total byte write 2508 >- datPlain12 staged >- state {staged-in} reached >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe9 threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >- executing groovy script >org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy >- executed groovy script >org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe8 threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >- RSL &( arguments = "-f" "datPlain12" )( directory = >"551218202107278041688" )( executable = "/home/ngs0386/bin/cimmsim" )( >stderr = "stderr.txt" )( stdout = "stdout.txt" )( count = "1" )( jobType >= "mpi" ) >- Submitting globus job to grid-data.man.ac.uk/jobmanager-pbs >- Globus job submitted https://grid-data.man.ac.uk:64304/25112/1174414409/ >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe7 threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >WseSourceProcessor: No destinations to route the event >- globus job is active - https://grid-data.man.ac.uk:64304/25112/1174414409/ >- state {active} reached >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe6 threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >- state {staging-out} reached >WseSourceProcessor: No destinations to route the event >- staging file >gsiftp://grid-data.man.ac.uk/551218202107278041688/stdout.txt -> >webdav://test:to...@ig...:18080/filestage/551218202107278041688/stdout.txt >[Fatal Error] :-1:-1: Premature end of file. >- total byte write 4353 >[Fatal Error] :-1:-1: Premature end of file. >- stdout.txt staged >- staging file >gsiftp://grid-data.man.ac.uk/551218202107278041688/stderr.txt -> >webdav://test:to...@ig...:18080/filestage/551218202107278041688/stderr.txt >[Fatal Error] :-1:-1: Premature end of file. >- total byte write 194 >[Fatal Error] :-1:-1: Premature end of file. >- stderr.txt staged >- staging file >gsiftp://grid-data.man.ac.uk/551218202107278041688/_th-details.out -> >webdav://test:to...@ig...:18080/filestage/551218202107278041688/_th-details.out >[Fatal Error] :-1:-1: Premature end of file. >- total byte write 32075 >[Fatal Error] :-1:-1: Premature end of file. >- _th-details.out staged >- state {staged-out} reached >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe5 threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) >- state {done} reached >- done 1174414390889 1174414391097 1174414406236 1174414430046 >1174414449984 1174414470047 1174414482532 1174414482572 >WseSourceProcessor: No destinations to route the event >- Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe4 threw >a JobExecutionException: >org.quartz.JobExecutionException > at >org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) > at org.quartz.core.JobRunShell.run(JobRunShell.java:191) > at >org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) > > > > > -- ----------------------------------------------------------------- Vesso A. Novov -- Research Assistant -- ----------------------------------------------------------------- London e-Science Centre http://www.lesc.doc.ic.ac.uk Imperial College London, Department of Computing 180 Queen's Gate, London SW7 2RH, UK tel: +44 (0)207-594-8399 fax: +44 (0)207-581-8024 ----------------------------------------------------------------- |
