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Re: [gridsam-discuss] Log file
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From: Mark HB <m.h...@ma...> - 2007-03-22 08:32:25
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Dear GRIDSam list, I am attempting to run an application on the NGS using AHE/GRIDSam bundled with the OMII-stack. I get the following error when trying to run the job: GridSAM state is: failed Time: 2007-03-22T08:23:48.172Z Description: cannot initialise working directory: Could not connect to FTP server on"gsiftp://grid-compute.leeds.ac.uk/ - User globus credential is required but not specified in the context". I can assure you that I have both a GRIDSam proxy certificate and proxy user certificate running. The GRAM log file found on the NGS machine can be found here: http://igrid-ext.cryst.bbk.ac.uk/gram_job_mgr_9570.log The main point in this log is "GRAM_SCRIPT_ERROR = 26" ABelow you will find the output produced in the catalina.log file. Has anyone come across this error before? I would appreciate any comments? Cheers Mark - principal obtained from Axis transport - EMA...@ma..., CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK - principal obtained from Axis transport - EMA...@ma..., CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK - state {pending} reached WseSourceProcessor: No destinations to route the event WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fec threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7feb threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) - principal obtained from Axis transport - EMA...@ma..., CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK - principal obtained from Axis transport - EMA...@ma..., CN=igrid.cryst.bbk.ac.uk, L=EISD, OU=UCL, O=eScience, C=UK WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fea threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) - state {staging-in} reached WseSourceProcessor: No destinations to route the event - Proxy Credentials received : /C=UK/O=eScience/OU=Imperial/L=LeSC/CN=mark halling-brown - basic authentication scheme selected - staging (copy) file http://test:to...@ig...:18080/filestage/551218202107278041688/datPlain12 -> gsiftp://grid-data.man.ac.uk/551218202107278041688/datPlain12 - basic authentication scheme selected - total byte write 2508 - datPlain12 staged - state {staged-in} reached WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe9 threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) - executing groovy script org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy - executed groovy script org/icenigrid/gridsam/core/plugin/connector/globus/rsl.groovy WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe8 threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) - RSL &( arguments = "-f" "datPlain12" )( directory = "551218202107278041688" )( executable = "/home/ngs0386/bin/cimmsim" )( stderr = "stderr.txt" )( stdout = "stdout.txt" )( count = "1" )( jobType = "mpi" ) - Submitting globus job to grid-data.man.ac.uk/jobmanager-pbs - Globus job submitted https://grid-data.man.ac.uk:64304/25112/1174414409/ WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe7 threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) WseSourceProcessor: No destinations to route the event - globus job is active - https://grid-data.man.ac.uk:64304/25112/1174414409/ - state {active} reached WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe6 threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) - state {staging-out} reached WseSourceProcessor: No destinations to route the event - staging file gsiftp://grid-data.man.ac.uk/551218202107278041688/stdout.txt -> webdav://test:to...@ig...:18080/filestage/551218202107278041688/stdout.txt [Fatal Error] :-1:-1: Premature end of file. - total byte write 4353 [Fatal Error] :-1:-1: Premature end of file. - stdout.txt staged - staging file gsiftp://grid-data.man.ac.uk/551218202107278041688/stderr.txt -> webdav://test:to...@ig...:18080/filestage/551218202107278041688/stderr.txt [Fatal Error] :-1:-1: Premature end of file. - total byte write 194 [Fatal Error] :-1:-1: Premature end of file. - stderr.txt staged - staging file gsiftp://grid-data.man.ac.uk/551218202107278041688/_th-details.out -> webdav://test:to...@ig...:18080/filestage/551218202107278041688/_th-details.out [Fatal Error] :-1:-1: Premature end of file. - total byte write 32075 [Fatal Error] :-1:-1: Premature end of file. - _th-details.out staged - state {staged-out} reached WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe5 threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) - state {done} reached - done 1174414390889 1174414391097 1174414406236 1174414430046 1174414449984 1174414470047 1174414482532 1174414482572 WseSourceProcessor: No destinations to route the event - Job ff80808211705e810111708d76680005.-6a0625b2:111705f74ad:-7fe4 threw a JobExecutionException: org.quartz.JobExecutionException at org.icenigrid.gridsam.core.plugin.manager.DefaultJobManagerContext$StageTask.execute(DefaultJobManagerContext.java:525) at org.quartz.core.JobRunShell.run(JobRunShell.java:191) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:516) -- --------------------------------------------------------------------------- Mark Halling-Brown | Tel: +44-20-7631-6839 Research Associate | Room 359 | Fax: +44-20-7631-6803 School of Crystallography | Birkbeck College | Email: Malet Street | gh...@ma... London WC1E 7HX | ma...@gm... UK | http://people.cryst.bbk.ac.uk/~ghall04 --------------------------------------------------------------------------- |
