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From: Mark HB <m.h...@ma...> - 2007-02-16 08:05:52
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Hey, Sincere apologies if this has sent twice! I am using AHE bundled with OMII server and have created a gridsam instance to point at the Manchester node of the NGS (thanks list for helping sort that out). This GRIDSam instance was installed by following the instructions found at: omii-server-3.2.0/managed_programme/AHE-1.0.2/dist/server/docs/index.html However when I try to run a job, it all goes wrong. Please find below the error I get, my jobmanger.xml and then the JSDL message itself. Can anyone help? Cheers Mark ############## ERROR ############## 12:37:20 INFO (StartCall.java:182) - AHE Job Owner: /C=UK/O=eScience/OU=Imperial/L=LeSC/CN=mark halling-brown 12:37:20 INFO (StartCall.java:176) - GridSAM Job ID: urn:gridsam:ff80808210c53a780110c5681f5f000a 12:37:20 INFO (StartCall.java:176) - GridSAM Job ID: urn:gridsam:ff80808210c53a780110c5681f5f000a 12:37:20 INFO (StartCall.java:176) - GridSAM Job ID: urn:gridsam:ff80808210c53a780110c5681f5f000a 12:37:20 INFO (StartCall.java:176) - GridSAM Job ID:urn:gridsam:ff80808210c53a780110c5681f5f000a 12:37:20 INFO (StartCall.java:176) - GridSAM Job ID:urn:gridsam:ff80808210c53a780110c5681f5f000a 12:37:20 INFO (StartCall.java:197) - GridSAM Job State: pending 12:37:20 INFO (StartCall.java:179) - GridSAM State Description:job is being scheduled 12:37:20 INFO (StartCall.java:185) - GridSAM Job submission time: 2007-02-15T12:37:19.840Z 12:37:20 INFO (StartCall.java:185) - GridSAM Job submission time: 2007-02-15T12:37:19.840Z 12:37:20 INFO (StartCall.java:197) - GridSAM Job State: failed 12:37:20 INFO (StartCall.java:179) - GridSAM State Description: Invalid JSDL v1.0 job description: [error: cvc-complex-type.2.4b: Element not allowed: Executable@http://schemas.ggf.org/jsdl/2005/11/jsdl-posix in element MPIApplication@urn:gridsam:mpi, error: cvc-complex-type.2.4b: Element not allowed: Argument@http://schemas.ggf.org/jsdl/2005/11/jsdl-posix in element MPIApplication@urn:gridsam:mpi, error: cvc-complex-type.2.4b: Element not allowed: Output@http://schemas.ggf.org/jsdl/2005/11/jsdl-posix in element MPIApplication@urn:gridsam:mpi, error: cvc-complex-type.2.4b: Element not allowed: Error@http://schemas.ggf.org/jsdl/2005/11/jsdl-posix in element MPIApplication@urn:gridsam:mpi, error: cvc-complex-type.2.4b: Element not allowed: WorkingDirectory@http://schemas.ggf.org/jsdl/2005/11/jsdl-posix in element MPIApplication@urn:gridsam:mpi, error: cvc-complex-type.2.4b: Element not allowed: WallTimeLimit@http://schemas.ggf.org/jsdl/2005/11/jsdl-posix in element MPIApplication@urn:gridsam:mpi] ################ JOBMANAGER.XML ################ <?xml version="1.0" encoding="UTF-8"?> <module id="jobmanager.globus" version="1.0.0"> <!-- dependent modules --> <sub-module descriptor="org/icenigrid/gridsam/resource/config/common.xml"/> <sub-module descriptor="org/icenigrid/gridsam/resource/config/embedded.xml"/> <sub-module descriptor="org/icenigrid/gridsam/resource/config/globus.xml"/> <sub-module descriptor="database.xml"/> <sub-module descriptor="authorisation.xml"/> <!-- override the factory defaults here --> <contribution configuration-id="hivemind.ApplicationDefaults"> <!-- The job manager location --> <default symbol="globus.JobManager" value="grid-data.man.ac.uk"/> <!-- The root file system for staging files --> <default symbol="globus.RootFileSystemURI" value="gsiftp://grid-data.man.ac.uk"/> <!-- How often the status of the job is polled --> <default symbol="globus.MonitoringPeriod" value="20000"/> <!-- the default location of the classad generation script WEB-INF/classes/rsl.groovy --> <default symbol="globus.ScriptResource" value="rsl.groovy"/> </contribution> </module> #################### JSDL ######################## <JobDefinition xmlns="http://schemas.ggf.org/jsdl/2005/11/jsdl"> <JobDescription> <JobIdentification> <JobName>NAMD_NGS_MAN</JobName> <Description>THIS IS FOR NAMD ON THE NGS</Description> <JobAnnotation>NAMD Annotation</JobAnnotation> <JobProject>AHE Project</JobProject> </JobIdentification> <Application> <mpi:MPIApplication xmlns="http://schemas.ggf.org/jsdl/2005/11/jsdl-posix" xmlns:mpi="urn:gridsam:mpi"> <mpi:ProcessorCount>1</mpi:ProcessorCount> <Executable>/home/ngs0386/bin/cimmsim</Executable> <Argument>datPlain12</Argument> <Output>stdout.txt</Output> <Error>stderr.txt</Error> <WorkingDirectory>195914151107445079635</WorkingDirectory> <WallTimeLimit>720</WallTimeLimit> </mpi:MPIApplication> </Application> <DataStaging> <FileName>datPlain12</FileName> <CreationFlag>overwrite</CreationFlag> <DeleteOnTermination>false</DeleteOnTermination> <Source><URI>http://test:to...@ig...:18080/filestage/195914151107445079635/datPlain12</URI></Source> </DataStaging><DataStaging><FileName>stdout.txt</FileName> <CreationFlag>overwrite</CreationFlag> <DeleteOnTermination>false</DeleteOnTermination> <Target><URI>webdav://test:to...@ig...:18080/filestage/195914151107445079635/stdout.txt</URI></Target> </DataStaging> <DataStaging> <FileName>stderr.txt</FileName> <CreationFlag>overwrite</CreationFlag> <DeleteOnTermination>false</DeleteOnTermination> <Target><URI>webdav://test:to...@ig...:18080/filestage/195914151107445079635/stderr.txt</URI></Target> </DataStaging> <DataStaging> <FileName>_th-details.out</FileName> <CreationFlag>overwrite</CreationFlag> <DeleteOnTermination>false</DeleteOnTermination> <Target><URI>webdav://test:to...@ig...:18080/filestage/195914151107445079635/_th-details.out</URI></Target> </DataStaging> </JobDescription> <myproxy:MyProxy xmlns:myproxy="urn:gridsam:myproxy"><myproxy:ProxyServer>myproxy.grid-support.ac.uk</myproxy:ProxyServer> <myproxy:ProxyServerDN>/C=UK/O=eScience/OU=CLRC/L=DL/CN=host/myproxy.grid-support.ac.uk/E=a...@dl...</myproxy:ProxyServerDN> <myproxy:ProxyServerPort>7512</myproxy:ProxyServerPort> <myproxy:ProxyServerUserName>ghall04</myproxy:ProxyServerUserName> <myproxy:ProxyServerPassPhrase>MYPSWORDHERE</myproxy:ProxyServerPassPhrase> <myproxy:ProxyServerLifetime>7512</myproxy:ProxyServerLifetime></myproxy:MyProxy> </JobDefinition> -- --------------------------------------------------------------------------- Mark Halling-Brown | Tel: +44-20-7631-6839 Research Associate | Room 359 | Fax: +44-20-7631-6803 School of Crystallography | Birkbeck College | Email: Malet Street | gh...@ma... London WC1E 7HX | ma...@gm... UK | http://people.cryst.bbk.ac.uk/~ghall04 --------------------------------------------------------------------------- |