GPU DePiCT Activity

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Activity for GPU DePiCT

• 1 decade ago

  Trevor Cickovski committed [r102]

  Fixed ALN file reader to not assume 60 acids pe...

• 1 decade ago

  Trevor Cickovski committed [r101]

  Fixed a Bus Error caused by a high optimization...

• 1 decade ago

  Trevor Cickovski committed [r100]

  Removed Folder/File with incorrect M.

• 1 decade ago

  Trevor Cickovski committed [r99]

  File/Folder had incorrect sequences size M.

• 1 decade ago

  Trevor Cickovski committed [r98]

  Fruit Fly Genome

• 1 decade ago

  Trevor Cickovski committed [r97]

  Added Drosophila (fruit fly) samples.

• 1 decade ago

  Trevor Cickovski committed [r96]

  Two optimizations for the CPU code:

• 1 decade ago

  Trevor Cickovski committed [r95]

  Removed one redundant comparison (it was checki...

• 1 decade ago

  Trevor Cickovski committed [r94]

  Seg fault fix, in case we use grids...

• 1 decade ago

  Trevor Cickovski committed [r93]

  Version with P

• 1 decade ago

  Trevor Cickovski committed [r92]

  Sped up the nucleotide code by a factor of 1.5 ...

• 1 decade ago

  Trevor Cickovski committed [r91]

  One small bug fix... i > j should immediately r...

• 1 decade ago

  Trevor Cickovski committed [r90]

  Since the amino acid table never changes, moved...

• 1 decade ago

  Trevor Cickovski committed [r89]

  Minor ~1% speedup in computeBlock gained by rem...

• 1 decade ago

  Trevor Cickovski committed [r88]

  Changed computeSim to exit if my thread number ...

• 1 decade ago

  Trevor Cickovski committed [r87]

  Cleaned up code, to match more closely to the p...

• 1 decade ago

  Trevor Cickovski committed [r86]

  Few more optimizations, minor (~1-2% speedup):

• 1 decade ago

  Trevor Cickovski committed [r85]

  Fixed some bugs in CPU amino acid comparisons

• 1 decade ago

  Trevor Cickovski committed [r84]

  Moved amino acid table to shared memory (~14% s...

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