Fixed ALN file reader to not assume 60 acids pe...
Fixed a Bus Error caused by a high optimization...
Removed Folder/File with incorrect M.
File/Folder had incorrect sequences size M.
Fruit Fly Genome
Added Drosophila (fruit fly) samples.
Two optimizations for the CPU code:
Removed one redundant comparison (it was checki...
Seg fault fix, in case we use grids...
Version with P
Sped up the nucleotide code by a factor of 1.5 ...
One small bug fix... i > j should immediately r...
Since the amino acid table never changes, moved...
Minor ~1% speedup in computeBlock gained by rem...
Changed computeSim to exit if my thread number ...
Cleaned up code, to match more closely to the p...
Few more optimizations, minor (~1-2% speedup):
Fixed some bugs in CPU amino acid comparisons
Moved amino acid table to shared memory (~14% s...