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From: Arnaud G. <arn...@gm...> - 2012-11-15 14:11:10
|
Hi Vinodh, As Kishore mentioned, you better post your email on the list, and could you post the complete error message, please? Thanks Arnaud On Fri, Nov 2, 2012 at 8:39 PM, Kishore Mosaliganti <kis...@gm...>wrote: > Hi Vinodh, > > I am not sure what this error means. Can you cut and paste the entire > error you are getting. Secondly, if you post your problem on the GoFigure2 > users list, the original developers may also respond to your question. I am > cc'ing this email to this list. > > Kishore > > On 11/02/2012 03:33 PM, Vinodh Mechery wrote: > > KK I am very close, compiling the master of GoFigure2 I many of this type > of error, is there an earlier version I could use? I built this against VTK > 5.8 and ITK 3.2 > > GoFigure2/Code/GUI/lib/VisualizationTraceContainers/TraceContainerBase.h:324:19: > error: use 'template' keyword to treat 'get' as a > dependent template name > m_Container.get< TIndex >(). > ^ > template > > > > On Fri, Nov 2, 2012 at 3:17 PM, Kishore Mosaliganti < > kis...@hm...> wrote: > >> Hi Vinodh, >> >> I used boost 1.49. >> >> Kishore >> >> >> >> On 11/02/2012 02:53 PM, Vinodh Mechery wrote: >> >> What version of boost should i use, I'm using 1.51 right now but there >> are errors building VTK >> >> /VTK/Infovis/vtkBoostBreadthFirstSearchTree.cxx:98:59: error: no member >> named 'Id' in >> 'boost::detail::reverse_graph_edge_descriptor<vtkEdgeType>' >> tree->GetEdgeData()->CopyData(graph->GetEdgeData(), e.Id, tree_e.Id); >> >> >> >> On Fri, Nov 2, 2012 at 2:10 PM, Kishore Mosaliganti < >> kis...@hm...> wrote: >> >>> Take the last version of ITK before 4.0. >>> >>> Kishore >>> >>> >>> >>> On 11/02/2012 01:54 PM, Vinodh Mechery wrote: >>> >>> KK thanks! and its ITK 3.4 correct? >>> >>> >>> On Fri, Nov 2, 2012 at 1:45 PM, Kishore Mosaliganti < >>> kis...@hm...> wrote: >>> >>>> Sorry, it is VTK 5.8. >>>> >>>> Kishore >>>> >>>> >>>> >>>> On 11/02/2012 01:44 PM, Vinodh Mechery wrote: >>>> >>>> I have been using the cmake-gui interface but in ccmake nothing comes >>>> up when i search using /VTK_USE_QT or /QT. Are we sure it is version 5.4? >>>> >>>> >>>> On Fri, Nov 2, 2012 at 1:21 PM, Kishore Mosaliganti < >>>> kis...@hm...> wrote: >>>> >>>>> Hi Vinodh, >>>>> >>>>> What does it tell you when you search for QT. For searching type / in >>>>> the ccmake interface. >>>>> >>>>> Kishore >>>>> >>>>> >>>>> >>>>> On 11/02/2012 12:28 PM, Vinodh Mechery wrote: >>>>> >>>>> After checking it out I just got it from this site. >>>>> http://www.vtk.org/files/release/5.4/ and even in the advanced option >>>>> I don't see it, I see everything else. Sorry to bother but I really want to >>>>> get this working. Thanks. >>>>> >>>>> - Vinodh >>>>> >>>>> >>>>> On Fri, Nov 2, 2012 at 12:21 PM, Mosaliganti, Kishore Rao < >>>>> Kis...@hm...> wrote: >>>>> >>>>>> There is a VTK_USE_QT in advanced options. Turn on >>>>>> VTK_USE_GUI_SUPPORT. Turn on VTK_USE_MYSQL. Then VTK_USE_BOOST. >>>>>> >>>>>> Kishore >>>>>> >>>>>> >>>>>> On Nov 2, 2012, at 12:16 PM, Vinodh Mechery wrote: >>>>>> >>>>>> Hey Kishore, >>>>>> >>>>>> I checked out VTK 5.4 but there is no option for VTK_USE_QT which >>>>>> I think is necessary right? >>>>>> >>>>>> - Vinodh >>>>>> >>>>>> >>>>>> On Fri, Nov 2, 2012 at 11:56 AM, Kishore Mosaliganti < >>>>>> kis...@hm...> wrote: >>>>>> >>>>>>> Hi Vinodh, >>>>>>> >>>>>>> Are you using the master branch from git? >>>>>>> >>>>>>> Build it against VTK 5.4 and ITK 3.4. >>>>>>> >>>>>>> Kishore >>>>>>> >>>>>>> >>>>>>> >>>>>>> On 11/02/2012 11:50 AM, Vinodh Mechery wrote: >>>>>>> >>>>>>>> Hey Kishore, >>>>>>>> >>>>>>>> I was able to resolve the problem building VTK. Now when I build >>>>>>>> GoFigure2 here are some of the errors I am receiving. >>>>>>>> >>>>>>>> GoFigure2/Code/ExternalCode/PoissonReconstruction/Octree.inl:793:2: >>>>>>>> error: reference to non-static member function must be called; >>>>>>>> did you mean to call it with no arguments? >>>>>>>> depth=node.depth; >>>>>>>> >>>>>>>> >>>>>>>> GoFigure2/Code/GUI/lib/VisualizationTraceContainers/TraceContainerBase.h:210:37: >>>>>>>> error: use 'template' keyword to treat 'get' as a >>>>>>>> dependent template name >>>>>>>> this->Print( this->m_Container.get< TIndex >().begin(), >>>>>>>> >>>>>>>> Do you have any insight? Or is there an earlier build that is >>>>>>>> stable. I just cloned the latest one from git. Thanks. >>>>>>>> >>>>>>>> - Vinodh >>>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>> >>>>> >>>> >>>> >>> >>> >> >> > > > > ------------------------------------------------------------------------------ > LogMeIn Central: Instant, anywhere, Remote PC access and management. > Stay in control, update software, and manage PCs from one command center > Diagnose problems and improve visibility into emerging IT issues > Automate, monitor and manage. Do more in less time with Central > http://p.sf.net/sfu/logmein12331_d2d > _______________________________________________ > Gofigure2-users mailing list > Gof...@li... > https://lists.sourceforge.net/lists/listinfo/gofigure2-users > > |
From: Kishore M. <kis...@gm...> - 2012-11-02 19:39:18
|
Hi Vinodh, I am not sure what this error means. Can you cut and paste the entire error you are getting. Secondly, if you post your problem on the GoFigure2 users list, the original developers may also respond to your question. I am cc'ing this email to this list. Kishore On 11/02/2012 03:33 PM, Vinodh Mechery wrote: KK I am very close, compiling the master of GoFigure2 I many of this type of error, is there an earlier version I could use? I built this against VTK 5.8 and ITK 3.2 GoFigure2/Code/GUI/lib/VisualizationTraceContainers/TraceContainerBase.h:324:19: error: use 'template' keyword to treat 'get' as a dependent template name m_Container.get< TIndex >(). ^ template On Fri, Nov 2, 2012 at 3:17 PM, Kishore Mosaliganti < kis...@hm...> wrote: > Hi Vinodh, > > I used boost 1.49. > > Kishore > > > > On 11/02/2012 02:53 PM, Vinodh Mechery wrote: > > What version of boost should i use, I'm using 1.51 right now but there are > errors building VTK > > /VTK/Infovis/vtkBoostBreadthFirstSearchTree.cxx:98:59: error: no member > named 'Id' in > 'boost::detail::reverse_graph_edge_descriptor<vtkEdgeType>' > tree->GetEdgeData()->CopyData(graph->GetEdgeData(), e.Id, tree_e.Id); > > > > On Fri, Nov 2, 2012 at 2:10 PM, Kishore Mosaliganti < > kis...@hm...> wrote: > >> Take the last version of ITK before 4.0. >> >> Kishore >> >> >> >> On 11/02/2012 01:54 PM, Vinodh Mechery wrote: >> >> KK thanks! and its ITK 3.4 correct? >> >> >> On Fri, Nov 2, 2012 at 1:45 PM, Kishore Mosaliganti < >> kis...@hm...> wrote: >> >>> Sorry, it is VTK 5.8. >>> >>> Kishore >>> >>> >>> >>> On 11/02/2012 01:44 PM, Vinodh Mechery wrote: >>> >>> I have been using the cmake-gui interface but in ccmake nothing comes up >>> when i search using /VTK_USE_QT or /QT. Are we sure it is version 5.4? >>> >>> >>> On Fri, Nov 2, 2012 at 1:21 PM, Kishore Mosaliganti < >>> kis...@hm...> wrote: >>> >>>> Hi Vinodh, >>>> >>>> What does it tell you when you search for QT. For searching type / in >>>> the ccmake interface. >>>> >>>> Kishore >>>> >>>> >>>> >>>> On 11/02/2012 12:28 PM, Vinodh Mechery wrote: >>>> >>>> After checking it out I just got it from this site. >>>> http://www.vtk.org/files/release/5.4/ and even in the advanced option >>>> I don't see it, I see everything else. Sorry to bother but I really want to >>>> get this working. Thanks. >>>> >>>> - Vinodh >>>> >>>> >>>> On Fri, Nov 2, 2012 at 12:21 PM, Mosaliganti, Kishore Rao < >>>> Kis...@hm...> wrote: >>>> >>>>> There is a VTK_USE_QT in advanced options. Turn on >>>>> VTK_USE_GUI_SUPPORT. Turn on VTK_USE_MYSQL. Then VTK_USE_BOOST. >>>>> >>>>> Kishore >>>>> >>>>> >>>>> On Nov 2, 2012, at 12:16 PM, Vinodh Mechery wrote: >>>>> >>>>> Hey Kishore, >>>>> >>>>> I checked out VTK 5.4 but there is no option for VTK_USE_QT which I >>>>> think is necessary right? >>>>> >>>>> - Vinodh >>>>> >>>>> >>>>> On Fri, Nov 2, 2012 at 11:56 AM, Kishore Mosaliganti < >>>>> kis...@hm...> wrote: >>>>> >>>>>> Hi Vinodh, >>>>>> >>>>>> Are you using the master branch from git? >>>>>> >>>>>> Build it against VTK 5.4 and ITK 3.4. >>>>>> >>>>>> Kishore >>>>>> >>>>>> >>>>>> >>>>>> On 11/02/2012 11:50 AM, Vinodh Mechery wrote: >>>>>> >>>>>>> Hey Kishore, >>>>>>> >>>>>>> I was able to resolve the problem building VTK. Now when I build >>>>>>> GoFigure2 here are some of the errors I am receiving. >>>>>>> >>>>>>> GoFigure2/Code/ExternalCode/PoissonReconstruction/Octree.inl:793:2: >>>>>>> error: reference to non-static member function must be called; >>>>>>> did you mean to call it with no arguments? >>>>>>> depth=node.depth; >>>>>>> >>>>>>> >>>>>>> GoFigure2/Code/GUI/lib/VisualizationTraceContainers/TraceContainerBase.h:210:37: >>>>>>> error: use 'template' keyword to treat 'get' as a >>>>>>> dependent template name >>>>>>> this->Print( this->m_Container.get< TIndex >().begin(), >>>>>>> >>>>>>> Do you have any insight? Or is there an earlier build that is >>>>>>> stable. I just cloned the latest one from git. Thanks. >>>>>>> >>>>>>> - Vinodh >>>>>>> >>>>>> >>>>>> >>>>> >>>>> >>>> >>>> >>> >>> >> >> > > |
From: Nicolas R. <nic...@hm...> - 2011-12-07 22:06:08
|
Hi all, GoFigure2 0.9.0 has been released today! Many changes and bug fixes in this new version. (see at the end of this email) Installers and source code are available at: http://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.9.0/ Enjoy GoFigure2, Nicolas ************* ** General ** ************* -New options at start up accessible from command line *help: list commands available *version: prints version of gofigure *shortcut: list shorcuts *input: open an image from command line *max number of meshes: select the threshold above with we only load 3 time points -New Shortcuts * Based on user's feedback for a more efficient and user friendly experience -Maximum size of the main window * GoFigure can be maximized over 2 screens ******************** ** Visualizations ** ******************** -The real colors are displayed -New transfer function editor to modify the appearance of a channel * Color * LUT * Gamma Correction * Opacity of the channel for the volume rendering -"Smart" Volume Rendering which adapts to your hardware -Enhanced Doppler View * Number of visible time points can be modified * Step between each time point can be modified * Color of each time point can be modified -Desynchronized Views Option * Zoom, Pan, Scroll in the 3 2D views independently -Show/Hide planes in the 3D view ************ ** Traces ** ************ -Meshes * Split * Merge -Tracks * Split * Merge * Editing widget (Split) * Visualization Widget (color, glyph, tubes, width) * Goto beginning/end of track * Track stats (volumes, etc.) -Lineages * All tracks action update the lineages * Visualization Widget (color) * Lineage stats (depth, etc.) -Export/import: * Easy to share your meshes, tracks and lineages * Import several files in parallel ***************** ** Performance ** ***************** -Load only 3 time points in memory if you have more than 5000 meshes (threshold customizable from command line) -Many actions are parallelized with Open MP ********** ** Bugs ** ********** -Lot of fixes including: -bug report: -easy to report a bug * close "Use DB wizard" does not crash * Go to this mesh update sliders * Do you want to delete the mesh?: NO does NOT delete it * Mesh position after semi auto segmentation is accurate (not centered on the seed) |
From: Arnaud G. <arn...@hm...> - 2011-07-28 21:31:26
|
Hi all, On the behalf of the GoFigure2 development team, I am proud to announce the release of a new release of GoFigure2. Packages are still being generated and little by little uploaded on the sourceforge website: https://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.8.2/ If you have any question or trouble, please let us know! Thanks!! Happy GoFigure2'ing Arnaud --- Changes: * fix bug in the mesh reconstruction * fix packaging bugs on Mac, Linux (for fedora distribution) * performance improvements when scrolling in images in the presence of meshes. |
From: Souhait, L. <Lyd...@hm...> - 2011-05-09 21:34:09
|
Hi Lynne, Please, could you send to us the error message shown by GoFigure ? Could you try also to go to the menu "Settings"/Database and see if you have "set up your database" that appears ? As you desinstalled mysql, you probably erased the gofiguredatabase as well and you need to set it up again. Let us know if it works. Thanks -----Original Message----- From: lchang [mailto:cha...@gm...] Sent: Monday, May 09, 2011 5:16 PM To: gof...@li... Subject: [Gofigure2-users] reinstalled MySQL and can't access database through GoFigure2 Hello - I uninstalled MySQL 5.5 and installed 5.1 per instructions on the Wiki. However, now when I try to access the database through GoFigure, I can't seem to logon - I tried the default login id and password and my previous login id and password - neither worked. When I installed MySQL 5.1, I first connected as root (mysql -u root -p) with no password. Am I supposed to establish a new password and login or should reinstall GoFigure? My operating system is Mac OS X vs 10.6.7. Thanks for your help, Lynne ------------------------------------------------------------------------------ WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ Gofigure2-users mailing list Gof...@li... https://lists.sourceforge.net/lists/listinfo/gofigure2-users |
From: lchang <cha...@gm...> - 2011-05-09 21:16:07
|
Hello - I uninstalled MySQL 5.5 and installed 5.1 per instructions on the Wiki. However, now when I try to access the database through GoFigure, I can't seem to logon - I tried the default login id and password and my previous login id and password - neither worked. When I installed MySQL 5.1, I first connected as root (mysql -u root -p) with no password. Am I supposed to establish a new password and login or should reinstall GoFigure? My operating system is Mac OS X vs 10.6.7. Thanks for your help, Lynne |
From: Arnaud G. <arn...@hm...> - 2011-05-05 21:19:27
|
Hi Kishore, If you have a github account, you can create a bug report on the following page: https://github.com/gofigure2/GoFigure2/issues If you don't, you can send us an email on the mailing list and we will open it for you. Best, Arnaud On 05/05/2011 05:13 PM, Kishore Mosaliganti wrote: > Hi all, > > Where do we file bug reports in Master branch of GoFigure? > > Kishore |
From: Kishore M. <kis...@gm...> - 2011-05-05 21:13:40
|
Hi all, Where do we file bug reports in Master branch of GoFigure? Kishore |
From: Arnaud G. <arn...@hm...> - 2011-04-19 13:35:11
|
Hi GoFigure2 users & developers, Thanks to Mathieu Malaterre, GoFigure2 has entered Debian unstable: see http://packages.qa.debian.org/g/gofigure2.html Thanks Mathieu!!! Cheers, Arnaud --- To install GoFigure2 on Debian: # apt-get install gofigure2 |
From: Gelas, A. J. F. <Arn...@hm...> - 2011-03-07 13:42:46
|
Hi Guy, You're welcome! Feel free to ask questions on this mailing list. Best, Arnaud ________________________________________ From: GUY MALKINSON [GU...@ro...] Sent: Monday, March 07, 2011 3:25 AM To: Gelas, Arnaud Joel Florent Subject: RE: [Gofigure2-users] Requesting assistance in installation Dear Arnaud, thank you so much for your help. I tried the XP 32bit executable, and it looks ok so far. Best Guy --- On Mon, 3/7/11, Gelas, Arnaud Joel Florent <Arn...@hm...> wrote: From: Gelas, Arnaud Joel Florent <Arn...@hm...> Subject: RE: [Gofigure2-users] Requesting assistance in installation To: "GUY MALKINSON" <GU...@ro...>, "gof...@li..." <gof...@li...> Date: Monday, March 7, 2011, 12:25 AM Hi Guy, This tarball contains the source code for people who wants to generate the executable themself. I would highly recommend you to download the installers for Windows. We don't have any installers specific for Windows Vista, but we do have some for Windows XP (32 and 64 bits) and Windows 7 (32 and 64 bits). At the following address, you'll be able to get these ones: http://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.7.1/ Note that we are going to upload this week a more recent version, so you can still install this one; but we will let you know once the newer version is available! Let us know, if you have any problems in the installation. Thanks, Cheers, Arnaud ________________________________________ From: GUY MALKINSON [GU...@ro...</mc/compose?to=GU...@ro...>] Sent: Saturday, March 05, 2011 1:09 PM To: gof...@li...</mc/compose?to=gof...@li...> Subject: [Gofigure2-users] Requesting assistance in installation Hi I downloaded and installed GoFigure2-v0.6.1.tar.gz (after configuring MySQL), but after extracting it, couldn't find any exe file. I am using Vista. Am I missing anything? Thank you and all the best Guy<http://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.6.1/GoFigure2-v0.6.1.tar.gz/download> |
From: Gelas, A. J. F. <Arn...@hm...> - 2011-03-07 00:25:59
|
Hi Guy, This tarball contains the source code for people who wants to generate the executable themself. I would highly recommend you to download the installers for Windows. We don't have any installers specific for Windows Vista, but we do have some for Windows XP (32 and 64 bits) and Windows 7 (32 and 64 bits). At the following address, you'll be able to get these ones: http://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.7.1/ Note that we are going to upload this week a more recent version, so you can still install this one; but we will let you know once the newer version is available! Let us know, if you have any problems in the installation. Thanks, Cheers, Arnaud ________________________________________ From: GUY MALKINSON [GU...@ro...] Sent: Saturday, March 05, 2011 1:09 PM To: gof...@li... Subject: [Gofigure2-users] Requesting assistance in installation Hi I downloaded and installed GoFigure2-v0.6.1.tar.gz (after configuring MySQL), but after extracting it, couldn't find any exe file. I am using Vista. Am I missing anything? Thank you and all the best Guy<http://sourceforge.net/projects/gofigure2/files/GoFigure2-v0.6.1/GoFigure2-v0.6.1.tar.gz/download> |
From: GUY M. <GU...@ro...> - 2011-03-05 18:36:19
|
Hi I downloaded and installed GoFigure2-v0.6.1.tar.gz (after configuring MySQL), but after extracting it, couldn't find any exe file. I am using Vista. Am I missing anything? Thank you and all the best Guy |
From: Nicolas R. <Nic...@hm...> - 2010-08-19 21:44:05
|
Hi all, The FFMPEG video recorder has been updated in GoFigure2 and VTK. It is now working with all the FFMPEG versions! Please let us know if you experience any trouble while making videos in GoFigure2! Best, Nicolas |
From: Nicolas R. <nic...@hm...> - 2010-08-04 18:14:40
|
Hi Fengzhu, We couldn't reproduce the bug. Nevertheless, we are aware of issues regarding the video recorder. There are some issues in the vtkFFMPEGWriter.cxx we use since it is not compatible with the most recent version of the FFMPEG library. We contacted the VTK guys and requested for some changes in the code. Hopefully, it will be fixed pretty soon. We will let you know as soon as it works again! Thanks for reporting the bug, Nicolas On Aug 2, 2010, at 6:22 PM, Arnaud Gelas wrote: > > > Begin forwarded message: > >> From: Fengzhu Xiong <xi...@fa...> >> Date: August 2, 2010 6:19:32 PM EDT >> To: "Mosaliganti, Kishore Rao" <Kis...@hm...> >> Cc: "Gelas, Arnaud Joel Florent" <Arn...@hm...> >> Subject: mesh movie >> >> Hi Kishore, >> >> Do you know why GoFigure2 movie maker only makes one movie and then >> can’t make more with different file names (even after restarting >> Gofigure)? >> >> Cheers, >> >> Fengzhu >> >> >> >> Fengzhu Xiong >> Program of Biological Sciences in Dental Medicine >> Megason Lab >> Department of Systems Biology >> Harvard Medical School >> 200 Longwood Ave. WAB536 >> Boston, MA 02115 >> (1)617-432-7443 >> www.digitalfish.org >> > > <ATT00001..txt><ATT00002..txt> |
From: Arnaud G. <Arn...@hm...> - 2010-08-02 22:22:13
|
Begin forwarded message: > From: Fengzhu Xiong <xi...@fa...> > Date: August 2, 2010 6:19:32 PM EDT > To: "Mosaliganti, Kishore Rao" <Kis...@hm...> > Cc: "Gelas, Arnaud Joel Florent" <Arn...@hm...> > Subject: mesh movie > > Hi Kishore, > > Do you know why GoFigure2 movie maker only makes one movie and then > can’t make more with different file names (even after restarting > Gofigure)? > > Cheers, > > Fengzhu > > > > Fengzhu Xiong > Program of Biological Sciences in Dental Medicine > Megason Lab > Department of Systems Biology > Harvard Medical School > 200 Longwood Ave. WAB536 > Boston, MA 02115 > (1)617-432-7443 > www.digitalfish.org > |
From: Antonin Perrot-A. <ant...@gm...> - 2010-05-31 21:21:39
|
As we are not using smart pointers, this induces a memoryy leaks when the second LSM image is openend. I don't know which strategy you want to use to collapse it : maybe, as for ITK importer, deletting the LSM reader invalidates its output images, which forces us to copy the output of the reader and keep track of it. in QGoMainWindow OpenLSMImage( const QString& iFile, const int& iTimePoint ) { m_LSMReader = vtkLSMReader::New(); m_LSMReader->SetFileName( iFile.toAscii().data() ); m_LSMReader->SetUpdateTimePoint( iTimePoint ); m_LSMReader->Update(); -- Antonin Perrot-Audet Electrical Engineering& Computer Sciences, INSA Lyon M2 GEGP Signal& Image Processing, INSA Lyon, UCBL, Centrale Lyon |
From: Antonin Perrot-A. <ant...@gm...> - 2010-05-25 18:28:03
|
Hello guys, I have been trying to debug memory leaks of Goimage lately, using the Instruments provided by apple Xcode framework. I have been able to detect two leaks that happens everytime somone uses the mouse over a QGoimageView. That comes from the GetImageCoordinatesFromWorldCoordinates and GetWorldCoordinatesFromImageCoordinates There are lots of int* and double* creations, some are attributed to vtkobjects after creation so that they are managed by them afterwards, but some are just passed, and don't get destroyed. Generally lots of pointers are not reinitialized or initialized to NULL (or 0) when not attributed, which makes memory control a very tricky game. For future coding : *when using a pointer, initialize it to 0 or NULL prior to using it* : blabla* pointer = NULL; pointer = other_pointer; or blabla* pointer = NULL; pointer = new blabla; it used to be the way to prevent bad malloc in C or delete in C (that happens), but still a good habit in C++. *When deleting a pointer just reset it to 0 or NULL after deletion* : delete pointer; pointer = NULL; or delete[] pointer; pointer = NULL; Generally a pointer is managed by the object which created it, if it has to be managed by another object, a hard copy would be advisable. If it is not possible to do so indicate wether your object is going to delete it or not, as a comment when creating the pointer, or which object you think will delete it. -- Antonin Perrot-Audet Electrical Engineering& Computer Sciences, INSA Lyon M2 GEGP Signal& Image Processing, INSA Lyon, UCBL, Centrale Lyon |
From: Antonin Perrot-A. <ant...@gm...> - 2010-05-20 20:24:05
|
The LUT is not working, on Mac for sure, both in the QGoImage classes, and on the Gofigure release. (tried with mha files). The result is random colors, and gets more and more random as the user changes LUT. -- Antonin Perrot-Audet Electrical Engineering& Computer Sciences, INSA Lyon M2 GEGP Signal& Image Processing, INSA Lyon, UCBL, Centrale Lyon |
From: Paul C. <pau...@gm...> - 2010-05-11 19:22:37
|
Hi, Found a new bug today -- When you click on the lookup table button when viewing a single-channel image on the linux version of GoFigure, and change the lookup table selected, the images in the quad view will at first display the image using some lookup table other than the one selected. When you single click and drag the mouse up and down, the correct lookup table will begin to be used, but the display scalar bar will still show the incorrect lookup table. Thanks, Paul |
From: Badri R. <ro...@ec...> - 2010-05-07 14:00:04
|
Hi Curtis, This restructuring is a good change. Badri Roysam Professor, Department of Electrical, Computer and Systems Engineering Associate Director, NSF Center for Subsurface Sensing & Imaging Systems (CenSSIS ERC) Co-Director, Rensselaer Center for Open Source Software Rensselaer Polytechnic Institute 110 8th Street, Troy, New York 12180-3590, USA. Office(JEC 7010): 518-276-8067, Assistant: 518-276-8525, Lab(JEC 6308): 518-276-8207, Fax: 518-276-8715 Email: ro...@ec..., Web: http://www.ecse.rpi.edu/~roysam ----- Original Message ----- From: Gelas, Arnaud Joel Florent [mailto:Arn...@hm...] To: Curtis Rueden [mailto:ctr...@wi...] Cc: Alexandre GOUAILLARD [mailto:ago...@gm...], Kevin Eliceiri [mailto:eli...@wi...], Brian Selinsky [mailto:bse...@wi...], Gaëtan Lehmann [mailto:gae...@jo...], Badri Roysam [mailto:ro...@ec...], Johannes Schindelin [mailto:Joh...@gm...], gof...@li... [mailto:gof...@li...], Bio-Formats [mailto:bio...@lo...], Luis Ibanez [mailto:lui...@ki...] Subject: RE: microscopy image analysis track at NAMIC > Hi Curtis, > > What a terrific news!!! I am really looking forward testing and using it! > > (I have just checked out /trunk/components/native/ and I m going to give it > a try later today...) > > Thanks for keeping us inform, > > Best regards, > Arnaud > ________________________________________ > From: ctr...@gm... [ctr...@gm...] On Behalf Of Curtis > Rueden [ctr...@wi...] > Sent: Thursday, May 06, 2010 8:26 PM > To: Gelas, Arnaud Joel Florent > Cc: Alexandre GOUAILLARD; Kevin Eliceiri; Brian Selinsky; Gaëtan Lehmann; > Badri Roysam; Johannes Schindelin; gof...@li...; > Bio-Formats; Luis Ibanez > Subject: Re: microscopy image analysis track at NAMIC > > Hi Arnaud, > > Thanks for downloading and testing gofigure! In this version, and even the > following one 0.4.2, we only supports couple of file type: > > Thanks for the information and links; I tried a JPEG file and it works. I > have hit a very busy development period now but will try to find time to > play with GoFigure2 more later. > > Soon, we would like to propose to gofigure's users the possibility to > benefit from bio-format readers. > Actually we would like to discuss with you about the best way to benefit > from bioformat with the license constraints. > > Good news on that front. We are planning to split Bio-Formats into two > parts: 1) a "bf-core" library which will be BSD-licensed, including the core > infrastructure, interfaces and OME-TIFF support; and 2) the full Bio-Formats > library, which will remain GPL, and contain support for all the life > sciences formats. > > This change should allow the Bio-Formats ITK plugin code to be included in > ITK itself without any legal ambiguity. And the bf-core.jar could even be > distributed freely with ITK as well. Then, to add full support for life > sciences formats, all a GoFigure2 user would have to do is download the full > Bio-Formats JAR and drop it into a folder on the classpath somewhere. Not > too bad a compromise, I think. > > Timeline on this work is later this summer—we'll make an announcement when > it happens. > > Regards, > Curtis > > On Thu, May 6, 2010 at 5:10 PM, Arnaud GELAS > <arn...@hm...<mailto:arn...@hm...>> wrote: > [...] > > > > P.S. I gave GoFigure2-0.4.1-Darwin-i386 a spin on my system, but it crashed > loading a TIFF file. Do you know of any sample data available online for use > with GoFigure2? > > > > > Hi Curtis, > > Sorry for the late reply, > > I am happy to hear the good news of the upcoming +1 in your life! > > Thanks for downloading and testing gofigure! In this version, and even the > following one 0.4.2, we only supports couple of file type: > > * 2d: png, jpeg, bmp, Meta Image format, lsm, tiff > * 3d: Meta Image format, lsm > * 4d: lsm, megacapture > > Now regarding the problem with your tiff image, it might be a multipage tiff > and the current version does not support it yet. > > We recently post some data on the sourceforge repository. > Stay tuned, we are going pretty soon to release 0.4.3, with a "one-click > segmentation" feature. > > I also invite you > > * to join gofigure2 mailing list: > https://lists.sourceforge.net/lists/listinfo/gofigure2-users > where you can post such kind of questions, report bugs, problems, etc. > * to have a look at tutorials: http://www.youtube.com/user/TheGoFigure2SF > > Soon, we would like to propose to gofigure's users the possibility to > benefit from bio-format readers. > Actually we would like to discuss with you about the best way to benefit > from bioformat with the license constraints. > > Best, > Arnaud > > |
From: Gelas, A. J. F. <Arn...@hm...> - 2010-05-07 13:12:25
|
Hi Curtis, What a terrific news!!! I am really looking forward testing and using it! (I have just checked out /trunk/components/native/ and I m going to give it a try later today...) Thanks for keeping us inform, Best regards, Arnaud ________________________________________ From: ctr...@gm... [ctr...@gm...] On Behalf Of Curtis Rueden [ctr...@wi...] Sent: Thursday, May 06, 2010 8:26 PM To: Gelas, Arnaud Joel Florent Cc: Alexandre GOUAILLARD; Kevin Eliceiri; Brian Selinsky; Gaëtan Lehmann; Badri Roysam; Johannes Schindelin; gof...@li...; Bio-Formats; Luis Ibanez Subject: Re: microscopy image analysis track at NAMIC Hi Arnaud, Thanks for downloading and testing gofigure! In this version, and even the following one 0.4.2, we only supports couple of file type: Thanks for the information and links; I tried a JPEG file and it works. I have hit a very busy development period now but will try to find time to play with GoFigure2 more later. Soon, we would like to propose to gofigure's users the possibility to benefit from bio-format readers. Actually we would like to discuss with you about the best way to benefit from bioformat with the license constraints. Good news on that front. We are planning to split Bio-Formats into two parts: 1) a "bf-core" library which will be BSD-licensed, including the core infrastructure, interfaces and OME-TIFF support; and 2) the full Bio-Formats library, which will remain GPL, and contain support for all the life sciences formats. This change should allow the Bio-Formats ITK plugin code to be included in ITK itself without any legal ambiguity. And the bf-core.jar could even be distributed freely with ITK as well. Then, to add full support for life sciences formats, all a GoFigure2 user would have to do is download the full Bio-Formats JAR and drop it into a folder on the classpath somewhere. Not too bad a compromise, I think. Timeline on this work is later this summer—we'll make an announcement when it happens. Regards, Curtis On Thu, May 6, 2010 at 5:10 PM, Arnaud GELAS <arn...@hm...<mailto:arn...@hm...>> wrote: [...] P.S. I gave GoFigure2-0.4.1-Darwin-i386 a spin on my system, but it crashed loading a TIFF file. Do you know of any sample data available online for use with GoFigure2? Hi Curtis, Sorry for the late reply, I am happy to hear the good news of the upcoming +1 in your life! Thanks for downloading and testing gofigure! In this version, and even the following one 0.4.2, we only supports couple of file type: * 2d: png, jpeg, bmp, Meta Image format, lsm, tiff * 3d: Meta Image format, lsm * 4d: lsm, megacapture Now regarding the problem with your tiff image, it might be a multipage tiff and the current version does not support it yet. We recently post some data on the sourceforge repository. Stay tuned, we are going pretty soon to release 0.4.3, with a "one-click segmentation" feature. I also invite you * to join gofigure2 mailing list: https://lists.sourceforge.net/lists/listinfo/gofigure2-users where you can post such kind of questions, report bugs, problems, etc. * to have a look at tutorials: http://www.youtube.com/user/TheGoFigure2SF Soon, we would like to propose to gofigure's users the possibility to benefit from bio-format readers. Actually we would like to discuss with you about the best way to benefit from bioformat with the license constraints. Best, Arnaud |
From: Curtis R. <ctr...@wi...> - 2010-05-07 00:34:08
|
Hi Arnaud, Thanks for downloading and testing gofigure! In this version, and even the > following one 0.4.2, we only supports couple of file type: > Thanks for the information and links; I tried a JPEG file and it works. I have hit a very busy development period now but will try to find time to play with GoFigure2 more later. Soon, we would like to propose to gofigure's users the possibility to > benefit from bio-format readers. > Actually we would like to discuss with you about the best way to benefit > from bioformat with the license constraints. > Good news on that front. We are planning to split Bio-Formats into two parts: 1) a "bf-core" library which will be BSD-licensed, including the core infrastructure, interfaces and OME-TIFF support; and 2) the full Bio-Formats library, which will remain GPL, and contain support for all the life sciences formats. This change should allow the Bio-Formats ITK plugin code to be included in ITK itself without any legal ambiguity. And the bf-core.jar could even be distributed freely with ITK as well. Then, to add full support for life sciences formats, all a GoFigure2 user would have to do is download the full Bio-Formats JAR and drop it into a folder on the classpath somewhere. Not too bad a compromise, I think. Timeline on this work is later this summer—we'll make an announcement when it happens. Regards, Curtis On Thu, May 6, 2010 at 5:10 PM, Arnaud GELAS <arn...@hm...>wrote: > [...] > > > P.S. I gave GoFigure2-0.4.1-Darwin-i386 a spin on my system, but it crashed > loading a TIFF file. Do you know of any sample data available online for use > with GoFigure2? > > > > > > Hi Curtis, > > Sorry for the late reply, > > I am happy to hear the good news of the upcoming +1 in your life! > > Thanks for downloading and testing gofigure! In this version, and even the > following one 0.4.2, we only supports couple of file type: > > - 2d: png, jpeg, bmp, Meta Image format, lsm, tiff > - 3d: Meta Image format, lsm > - 4d: lsm, megacapture > > Now regarding the problem with your tiff image, it might be a multipage > tiff and the current version does not support it yet. > > We recently post some data on the sourceforge repository. > Stay tuned, we are going pretty soon to release 0.4.3, with a "one-click > segmentation" feature. > > I also invite you > > - to join gofigure2 mailing list: > https://lists.sourceforge.net/lists/listinfo/gofigure2-users > where you can post such kind of questions, report bugs, problems, etc. > - to have a look at tutorials: > http://www.youtube.com/user/TheGoFigure2SF > > > Soon, we would like to propose to gofigure's users the possibility to > benefit from bio-format readers. > Actually we would like to discuss with you about the best way to benefit > from bioformat with the license constraints. > > Best, > Arnaud > |
From: Gelas, A. J. F. <Arn...@hm...> - 2010-04-27 12:43:01
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Hi all, This is the kick off this mailing list: the first email on the users mailing list! Regards, Arnaud |