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 CMake 2011-12-20 Arnaud Gelas Arnaud Gelas [cf384e] Merge branch 'SuperbuildITK'
 Code 2011-12-08 Arnaud Gelas Arnaud Gelas [432cda] Merge branch 'master' of github.com:gofigure2/G...
 Dashboard 2010-12-25 Arnaud Gelas Arnaud Gelas [a3162a] Merge branch 'develop'
 Documentation 2011-09-16 Arnaud Gelas Arnaud Gelas [8844fa] Merge branch 'develop' into SplitMergeIntegration
 Examples 2011-12-05 Nicolas Rannou Nicolas Rannou [555a8d] Merge branch 'RC1'
 Interfaces 2011-02-09 Arnaud Gelas Arnaud Gelas [89138f] Merge branch 'develop' into feature_MeshSplitMerge
 KWStyle 2011-02-09 Arnaud Gelas Arnaud Gelas [89138f] Merge branch 'develop' into feature_MeshSplitMerge
 Licenses 2011-12-05 Nicolas Rannou Nicolas Rannou [555a8d] Merge branch 'RC1'
 Main 2011-12-07 Arnaud Gelas Arnaud Gelas [a9a8db] Merge branch 'master' of github.com:gofigure2/G...
 Plugins 2011-03-25 Arnaud Gelas Arnaud Gelas [e21f1f] Merge branch 'feature_MeshSplitMerge' into Spli...
 Resources 2011-12-05 Nicolas Rannou Nicolas Rannou [555a8d] Merge branch 'RC1'
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 Testing 2011-12-06 Arnaud Gelas Arnaud Gelas [dcc114] Merge branch 'master' of github.com:gofigure2/G...
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 CMakeLists.txt 2011-12-08 Arnaud Gelas Arnaud Gelas [432cda] Merge branch 'master' of github.com:gofigure2/G...
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 GOFIGURE2CPack.cmake 2011-12-05 Nicolas Rannou Nicolas Rannou [555a8d] Merge branch 'RC1'
 GOFIGURE2CPackOptions.cmake.in 2011-12-05 Nicolas Rannou Nicolas Rannou [555a8d] Merge branch 'RC1'
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 GoFigure2Config.cmake.in 2011-10-07 NicolasRannou NicolasRannou [135751] Merge branch 'feature_NewTFEditor' of github.co...
 GoFigure2IncludeDirectories.cmake 2010-12-25 Arnaud Gelas Arnaud Gelas [a3162a] Merge branch 'develop'
 ReadMe.rst 2011-12-05 Nicolas Rannou Nicolas Rannou [555a8d] Merge branch 'RC1'

Read Me

GoFigure2

1. Introduction

The prime goal of GoFigure2 is the automatic segmentation of nuclei and cell membranes and in temporally tracking them amidst cell division to create lineages.

2. Installation

2.1. From Package

2.2. From Sources

Please refer to * http://sourceforge.net/apps/trac/gofigure2/wiki/DeveloperSetUp * http://sourceforge.net/apps/trac/gofigure2/wiki/Compilation * http://sourceforge.net/apps/trac/gofigure2/wiki/VideoSupport

2.2.1. Prerequites

User or developpers should first install the following libraries and softwares: * CMake (>=2.8.2) visit http://www.cmake.org * Qt (>=4.5) visit http://www.qtsoftware.com * MySQL (=5.1) visit http://www.mysql.com * FFMPEG (optional Linux or Mac) visit visit http://www.ffmpeg.org * VTK with Qt and MYSQL (>=5.6) visit http://www.vtk.org * ITK (>=3.20) visit http://www.itk.org * Boost (>=1.38) visit http://www.boost.org

2.2.2. Configuration

  • On Linux and Mac:
Create a build directory (where GoFigure2 will be compiled)::
$ mkdir BUILD
Launch cmake::
$ cd BUILD $ ccmake path/to/source/directory
Build::
$ make -j8
Install::
# make install