GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing, Affy and Agilent Microarrays, Sequenom MassArray and Bioanalyzer.
GNomEx is a web application with a Flash client user interface and a Java backend that runs on the Application server called Orion. GNomEx will be ported to Apache Tomcat this spring. MySQL is used for the database, although any modern RDBMS can be used.
Visit our GNomEx User Guide on our Wiki [http://hci-bio-wiki.hci.utah.edu/biowiki/index.php/Main_Page]