Activity for GMOL
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GMOL released /human_chromosome_GSS_Structures.zip
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Jianlin Cheng posted a comment on discussion General Discussion
Hi Tash, Our open source tool GenomeFlow that can generate a 3D model in .gss format from HiC data and visualize it is released here: https://github.com/jianlin-cheng/GenomeFlow . Please try this tool on your data. It should work well. Let us know if you have any question about how to use it. Best, Jianlin Jianlin (Jack) Cheng, PhD William and Nancy Thompson Missouri Distinguished Professor Department of Electrical Engineering and Computer Science MU Informatics Institute University of Missouri -...
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Oluwatosin Oluwadare posted a comment on discussion General Discussion
Hi Tash, Based on the way, Gmol was programmed, this cannot be done because the .gss format used in Gmol is prgrammed to contain data about the lower resolution/scale such as fibre or loci at the chromosome level. Currently, we are making adjustment to the .gss format so that it can handle different formats such as the one you are trying to solve without including the lower resolution scale. The adjustment has been included in animprovement over Gmol called GenomeFlow. This work is currently under...
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Anastasia Koch posted a comment on discussion General Discussion
Hi I was hoping for some advice for bacterial Hi-C data. I have a 3D model in PDB format and was looking to convert it to .gss fomart to be used with GMOL. However the organism I'm working with only has one chromosome and no real fibres or loci. I was wondering if those files could be left empty or omitted during conversion. Any help/advice would be greatly appreciated. Thanks Tash
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Description of the GSS Format
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Description of the GSS Format
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Description of the GSS Format
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Description of the GSS Format
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Description of the GSS Format
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Description of the GSS Format
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Description of the GSS Format
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Home
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Description of the GSS Format
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CONVERTING FROM .PDB TO .GSS
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Home
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Home
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CONVERTING FROM .PDB TO .GSS
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CONVERTING FROM .PDB TO .GSS
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Lingfei Xu committed [5665c3]
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Gmol veriosn 1.3 source code
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gmol version1.1 source code and java runnable file
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Gmol version 1.8 source code
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Gmol version 1.8 source code
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Gmol version 1.4 source code
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Gmol version 1.9 Java runnable
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Gmol verison 1.4 source code
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Gmol Version 1.9 source code
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get Gene Information Bug fixed
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Gmol version 1.6 source code
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Gmol version 1.7 source code
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sequence length bug fixed
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Gmol version 1.9 source code
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Gmol version 2.0 source code and Java Runable file
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Lingfei modified a wiki page
GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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Using GMOL
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Using GMOL
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Jackson Nowotny modified a wiki page
Using GMOL
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Using GMOL
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Using GMOL
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Using GMOL
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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Avery Wells renamed a wiki page
Why Genome Structure Modelling is Important
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Compiling GMOL in Eclipse
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Compiling GMOL in Eclipse
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Installing GMOL
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Installing GMOL
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Installing GMOL
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Installing GMOL
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
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GMOL Walkthrough
