NOTE: These patches are only needed if running separate instances of CMap on the
same machine using different configuration directories. If you don't know what
that means, you probably don't need these patches.
These patchs solve a problem where various modules never learn that they are
using a different config_dir. This causes some of the modules to use the wrong
set of configuration files which in turn can cause problems.
cmap_admin.080228.v0.16.patch:
Apply this patch to the cmap_admin.pl file.
$ patch bin/cmap_admin.pl cmap_admin.080228.v0.16.patch
config_dir.080228.v0.16.patch:
This patch patches mutliple modules.
To apply this patch in the cmap package directory, simply use the following command:
$ patch -p0 < config_dir.080228.v0.16.patch
If you wish to use the patch on the working modules, cd into the Bio/GMOD/ directory and use the following:
$ sudo patch -p3 < config_dir.080228.v0.16.patch
CMap v0.16 Multiple Config Directories