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From: Naama M. <nm...@co...> - 2006-07-13 14:03:17
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Thanks fro your reply! What about a GenBank to gff3 file converter? Is there anything available from GMOD? Scott Cain wrote: >Hi Naama, > >The pub module only very lightly used right now; I don't know if FlyBase >has loaded their pub data into chado, Dave or Pinglei? > >Even if they have, I imagine they are using custom scripts to load the >data. > >Scott > > >On Wed, 2006-07-05 at 16:16 -0400, Naama Menda wrote: > > >>Hi, >> >>Is there a GMOD tool for bulk loading publication data into CHADO's pub >>module? >> >>I'd also like to load data from a GenBank file into the sequence module, >>but I only found gmod_fasta2gff3.pl. >>The problem is fasta files do not contain many of the fields that exist >>in the .gb file. >>Is there an available script for converting genbank format directly to >>gff3? >> >>Thanks! >> >>-Naama >> >> >> >>Using Tomcat but need to do more? Need to support web services, security? >>Get stuff done quickly with pre-integrated technology to make your job easier >>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo >>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 >>_______________________________________________ >>Gmod-schema mailing list >>Gmo...@li... >>https://lists.sourceforge.net/lists/listinfo/gmod-schema >> >> |