Re: [Gmod-schema] Bulk loading of publications and sequences

[Scott C. <ca...@cs...>]

Hi Naama,

The pub module only very lightly used right now; I don't know if FlyBase
has loaded their pub data into chado, Dave or Pinglei?

Even if they have, I imagine they are using custom scripts to load the
data.

Scott


On Wed, 2006-07-05 at 16:16 -0400, Naama Menda wrote:
> Hi,
>=20
> Is there a GMOD tool for bulk loading publication data into CHADO's pub=20
> module?
>=20
> I'd also like to load data from a GenBank file into the sequence module,=20
> but I only found gmod_fasta2gff3.pl.
> The problem is fasta files do not contain many of the fields that exist=20
> in the .gb file.
> Is there an available script for converting  genbank format directly to=20
> gff3?
>=20
> Thanks!
>=20
> -Naama
>=20
>=20
>=20
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--=20
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         ca...@cs...
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory