Re: [GMOD-devel] MGED ontology loader

[John C. M. <jcm...@ge...>]

I think the MGED group has chosen to use Redland/Raptor (RDF::Redland)  
to handle the MGED ontology.
	http://librdf.org/

and I think it has bindings for most languages (including perl).  It  
does have some C-lib prerequisites.

Most of this preliminary work was done earlier this year at a jamboree  
hosted at TIGR (Joe White).
	http://sourceforge.net/mailarchive/forum.php? 
thread_id=4849041&forum_id=9395
I think this is the state of the parser?
	http://cvs.sourceforge.net/viewcvs.py/mged/lib/Perl/script/ 
MGEDOntology_parser.pl?rev=1.2


That's pretty much as much as I know,

John

On Oct 23, 2004, at 4:39 PM, Allen Day wrote:

> that's right.  maybe gain sherlock can say something about parsing mged
> ontology, i seem to remember him saying something about the lack of  
> perl
> tools in the semantic web / ontology area.
>
> there is a real need for DAML+OIL, OWL, and OBO parsers in bioperl if
> anyone is up to the task.
>
> -allen
>
>
> On Sat, 23 Oct 2004, Scott Cain wrote:
>
>> Hi Kara,
>>
>> Currently the only loader I know of is the one that Allen wrote that
>> loads DAG-Edit formatted files.  I don't think DAML files can be read  
>> by
>> Bio::OntologyIO, so I don't think it could be easily perverted for  
>> your
>> use.  Sorry.
>>
>> Scott
>>
>>
>> On Fri, 2004-10-22 at 17:14, Kara Dolinski wrote:
>>> Hi,
>>>
>>> Has anyone out there written (or know of) a script that loads MGED
>>> ontologies into chado?
>>>
>>> Thanks,
>>> Kara
>>>
>>>
>>>
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