Re: [Gmod-ajax] Jbrowse2 | Highlight parameter Issue

[Colin <col...@gm...>]

Hi there,

Here is an example of using the highlight parameter, I think it works. If
it is not working, can you confirm your jbrowse version you are using?

https://jbrowse.org/code/jb2/main/?config=test_data/volvox/config.json&loc=ctgA:1-800&assembly=volvox&tracks=gff3tabix_genes&highlight=ctgA:100-700

>Another issue is when I load fasta assembly in jbrowse and in the search
if I go to a specific gene or chromosome, I am losing the information of
other genes to its sides as it only shows the gene searched for. Please let
me know if there is a fix for this.

currently the search makes it zoom in to the exact boundaries of the
feature of interest. do you want it to be a little more zoomed out? this is
not currently configurable but we could try to add that


-Colin

On Wed, Nov 20, 2024 at 1:25 PM Revanth Sai Kumar Reddy Patel via Gmod-ajax
<gmo...@li...> wrote:

> Dear Team,
>
> Hope you are doing well. I appreciate the development and contributions to
> open source community for Jbrowse.
>
> I am currently facing issue using highlight in URL, I am using it as
> suggested in the document, but I don’t see anything highlighted on the UI.
> Please help me what could be going wrong here, do I need to install any
> other plugins or change configs?
>
>
> Another issue is when I load fasta assembly in jbrowse and in the search
> if I go to a specific gene or chromosome, I am losing the information of
> other genes to its sides as it only shows the gene searched for. Please let
> me know if there is a fix for this.
>
> I appreciate your response.
>
> Best,
>
> *Revanth Sai Kumar Reddy Patel*
>
> *Software/System Engineer – **Dr. Yin’s Lab*
>
> University of Nebraska–Lincoln
>
>
>
>
>
>
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