Re: [Gmod-ajax] Running Apollo in JBrowse

[Dorita A. <dor...@um...>]

Dear Colin,

I thank you for clearing this issue for me. I will read a bit more about
'running a web server'.
In the meantime can you please advice me on which application to use for a
small amount of manual annotation curation of a relatively small genome
(150kbp) on a Mac?

Yours truly,
Dorita Agius B.Sc. M.Phil.
Senior Lecturer II
RM D004 Junior College
University of Malta
Phone: 00356 7938 2887
dor...@um...



On Thu, 29 Feb 2024 at 23:43, Colin <col...@gm...> wrote:

> Hi Dorita
>
> Apollo is a server side app, written in java, that basically has it's own
> installation instructions here
> https://genomearchitect.readthedocs.io/en/latest/
>
> It requires running a server, so it doens't work with JBrowse desktop, you
> would need to run a web server to set it up.
>
> The current Apollo ("Apollo v2") also only works with JBrowse 1 now, but
> we are working on a new version of Apollo ("Apollo v3") that is compatible
> with JBrowse 2
>
> Hope that helps!
> -Colin
>
>
>
> On Thu, Feb 29, 2024 at 2:52 PM Dorita Agius <dor...@um...>
> wrote:
>
>> Dear Sir or Madame,
>>
>> I am trying to run Apollo within JBrowse on desktop (MacBook Pro).
>> However in both JBrowse V2.10.2 and 1.16.11 and in both cases I cannot find
>> the plugin store for installation of Apollo.
>> What am I doing wrong please?
>>
>> If this is not the right email address to use for this difficulty can you
>> guide me to the right one please?
>>
>> [image: image.png]
>>
>>
>>
>> [image: image.png]
>>
>> Thank you
>>
>> Yours truly
>>
>> Dorita Agius B.Sc. M.Phil.
>> Senior Lecturer II
>> RM D004 Junior College
>> University of Malta
>> Phone: 00356 7938 2887
>> dor...@um...
>>
>>
>> *The contents of this email are subject to these terms
>> <https://www.um.edu.mt/disclaimer/email/>.*
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>

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