Re: [Gmod-ajax] Running Apollo in JBrowse

[Colin <col...@gm...>]

Hi Dorita

Apollo is a server side app, written in java, that basically has it's own
installation instructions here
https://genomearchitect.readthedocs.io/en/latest/

It requires running a server, so it doens't work with JBrowse desktop, you
would need to run a web server to set it up.

The current Apollo ("Apollo v2") also only works with JBrowse 1 now, but we
are working on a new version of Apollo ("Apollo v3") that is compatible
with JBrowse 2

Hope that helps!
-Colin



On Thu, Feb 29, 2024 at 2:52 PM Dorita Agius <dor...@um...> wrote:

> Dear Sir or Madame,
>
> I am trying to run Apollo within JBrowse on desktop (MacBook Pro). However
> in both JBrowse V2.10.2 and 1.16.11 and in both cases I cannot find the
> plugin store for installation of Apollo.
> What am I doing wrong please?
>
> If this is not the right email address to use for this difficulty can you
> guide me to the right one please?
>
> [image: image.png]
>
>
>
> [image: image.png]
>
> Thank you
>
> Yours truly
>
> Dorita Agius B.Sc. M.Phil.
> Senior Lecturer II
> RM D004 Junior College
> University of Malta
> Phone: 00356 7938 2887
> dor...@um...
>
>
> *The contents of this email are subject to these terms
> <https://www.um.edu.mt/disclaimer/email/>.*
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