[Gmod-schema] Latest Gadfly Chado Load

[Colin W. <cw...@fr...>]

The latest chado gadfly load, version 04, is available at
ftp://ftp.fruitfly.org/pub/people/cwiel/.

The major changes are:

1.  GO integration.
2.  SO feature types.
3.  Adherence to latest chado schema.

Release notes are below.

Cheers,
Colin


----------------------------------------
RELEASE NOTES
Gadfly Chado Load 0.4
Colin Wiel
4/14/03

This version of the Gadfly Chado load has the following changes:

1.  GO Integration
The GO terms have been loaded as three CV's: cellular_component,
molecular_function, and biological_process.  Each GO term is a cvterm,
and the isa and partof relationships are stored in cv_relationship.  A
dbxref was created for each term, and associated in cvterm_dbxref.  GO
associations are stored in feature_cvterm.

2.  SO Feature Types
A CV called SO was created, with 30 terms.  Almost all of these are in
the current version of SO, although a few are not yet in SO (e.g. arm,
and protein).  These remaining terms will be resolved with SO in the
next few weeks, probably by adding these terms to SO.  Each feature now
has a SO term as its type_id.  In a future release, after SO has
stabilized, I will load all 800-ish SO terms, and will also load the
cv_relathionships, dbxrefs, and cvterm_dbxrefs.

3.  Chado Schema 
The load uses the latest chado schema.

Note:
Relationship types "part of" and "produced by" have been changed to
"partof" and "producedby" to adhere to the GO protocol.
----------------------------------------