[Gmod-schema] Re: Action points from yesterday's conversation on the modular schema

[Chris M. <cj...@fr...>]

On Fri, 18 Oct 2002, David Emmert wrote:

> There's at least one gene model annotation which *didn't* load properly,
> mod(mdg4), which is a nasty case of trans splicing who's "join" locations
> my location parser definitely did not appreciate.  Here's what one of the
> mod(mdg4) GB mRNA features looks like:
>
>      mRNA            join(138523..138735,138795..139263,
>                      complement(154413..154524),complement(153944..154201),
>                      complement(153727..153866),complement(152185..153037))
>                      /product="CG32491-PZ"
>                      /note="trans splicing"
>
> Parser go bung!

Hi Dave - what parser are you using for this? the schema itself should
have no problem with this, it's just exon features on mixed strands.

I'd be intersted in seeing how the dicistronic genes look - that's
trickier than transsplicing