Re: [Gmod-ajax] JBrowse React component

[Colin <col...@gm...>]

Hi Adrienne,
To my knowledge, Genbank files are mostly used for representing gene
features, so loading the FeatureTrack from the GFF that you converted from
Genbank is probably getting most of the value out of the file. If you have
links to the genbank data though we could check it out.

-Colin


On Fri, Jul 21, 2023 at 11:07 AM Adrienne Kwan <adr...@sf...> wrote:

> Hi JBrowse team,
>
>
> I am using the @jbrowse/react-linear-genome-view component in a React web
> app. All my input files are GenBank.
>
>
> My web app currently uses:
>
> - *Reference Sequence Track* (by converting Genbank to FASTA)
>
> - *Feature Track* (by converting GenBank to GFF)
>
>
> What other tracks can I use, if I only have GenBank input files?
>
>
> I am completely new to bioinformatics and come mainly from a computer
> science background, so I don't know much about these individual file types
> and how they work with JBrowse!
>
>
> I tried creating an *Alignments Track* (by converting GenBank to BAM),
> but the `samtools quickcheck` said that the BAM file "had no targets in
> header", and the JBrowse alignments track said "Error: problem
> decompressing block: incorrect gzip header check".
>
>
> Thanks,
>
>
> Adrienne
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