Re: [Gmod-ajax] [apollo] Importing itemRgb column of bed files

[Nathan D. <nd...@gm...>]

This is more of a JBrowse 1 question. 

Nathan	


> On Apr 13, 2023, at 8:49 AM, Antonin Thiébaut <ant...@gm...> wrote:
> 
> Hello all,
> 
> I was wondering whether there is a way to import the itemRgb column of a bed file. I would like to use it to color the features.
> 
> I am currently using the following command in Apollo v2.6.2 to create the bed tracks:
> perl -w bin/flatfile-to-json.pl --bed path/to/bed --trackLabel putative_orf --key "PCCR bacteria" --out data/bacteria/ --config '{ "category": "Coding Potential" }' --trackType CanvasFeatures
> 
> This successfully imports the file and there is no display problem on the browser, however I have the feeling it only imports the data of the first few columns of the file (I checked in the tracks directory that is created during the import). Can it be caused by an improper formatting or my file? Or am I missing an option in the command, is there another script to do this?
> 
> Thank you in advance,
> 
> Antonin
> 
> -- 
> To unsubscribe from this group and stop receiving emails from it, send an email to apo...@lb... <mailto:apo...@lb...>.