Re: [Gmod-ajax] setup

[Colin <col...@gm...>]

The issue from your setup.log is probably related to a large change to the
BioPerl package library that happened in BioPerl v1.7.3 (
https://github.com/bioperl/bioperl-live/commit/1760fa57142a5570b1e93e4423c621aa5e9f3b3e
)

You can manually install the last working version of BioPerl with

bin/cpanm -v --notest -l extlib/ Bio::Perl@1.7.2

This is actually the exact command the latest version (v1.16.11) of JBrowse
1 uses in it's setup.sh, but may help with your version (v1.12.3)

See https://github.com/GMOD/jbrowse/blob/master/setup.sh#L153-L156


-Colin

On Mon, Jan 23, 2023 at 10:53 AM Scott Cain <sc...@sc...> wrote:

> Hello,
>
> It looks like you are trying to install a very old version of JBrowse 1;
> is there a reason you don't want to try something newer?
>
> Scott
>
>
> On Mon, Jan 23, 2023 at 9:18 AM 你好 生活 via Gmod-ajax <
> gmo...@li...> wrote:
>
>>
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>
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> Scott Cain, Ph. D.                                                  scott
> at scottcain dot net
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