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From: Sonal C. <son...@gm...> - 2022-11-14 09:02:49
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Dear Andrew, Greetings from Australia! I am Sonal Channale, a recent PhD graduate from University of Southern Queensland, Australia. I attended the online workshop on JBrowse early this month and it was indeed great to learn about it. I am working on chickpea-root-lesion nematode (*Pratylenchus thornei*) interaction and currently assessing the candidate genes in chickpea using genome-wide association study. I am trying my hands on JBrowse and I have a few queries regarding the same. I would be really grateful if you can please help me or advise me to make best use of JBrowse. Here is, in brief what I would like to do using JBrowse and steps followed for the same: The SNP positions were obtained from GWAS and would like to enlist the genes flanking SNP positions (+/-10Kb). 1. I used the below link: https://cicer.legumeinfo.org/tools/jbrowse2/?session=local-ac4IbvVnj 2. Eg; As per the SNP position the range was edited as : cicar.CDCFrontier.gnm3.chr3:2,405,579..2,425,579 3. I was able to see a number of genes within the above range. I would like to save the list of genes and would like to search for their possible role in chickpea-*P. thornei* interaction with available literature. Based on the above steps, is there any way to save the list of genes as per the specified range. I have multiple associations from the study and would like to know what best can be done to save the list of genes within specified range. Please let me know in this regard. Thank you and kind regards, Sonal Channale. |