Re: [Gmod-ajax] How to parse md tag in CRAM files

[Ziwei W. <wa...@cp...>]

Hello,

Thanks for your quick reply! I made the question more clear with two screenshots here.

Sincerely,

Lilas


-----原始邮件-----
发件人:Colin <col...@gm...>
发送时间:2022-11-12 07:55:03 (星期六)
收件人: "Ziwei Wang" <wa...@cp...>
抄送: gmod-ajax <gmo...@li...>
主题: Re: [Gmod-ajax] How to parse md tag in CRAM files


In jbrowse code we use feature.get('mismatches') which works on BAM and CRAM features. Would that help your case?


-Colin


On Fri, Nov 11, 2022, 4:06 PM Ziwei Wang <wa...@cp...> wrote:


Hello, 

I have BAM files and CRAM files with MD tags and need to use MD tags to filter the bases I need. When I use BAM files, everything works fine. But when I use CRAM files, there are no MD tags in Feature.record. How should I get MD tags in CRAM files? Thanks!

Sincerely,

Lilas

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