Re: [Gmod-ajax] JBrowse XML parsing errors

[Vaneet L. <van...@uc...>]

Thanks Colin, that's good to know.

Vaneet
________________________________
From: Colin <col...@gm...>
Sent: June 1, 2022 4:43 PM
To: Vaneet Lotay <van...@uc...>
Cc: gmo...@li... <gmo...@li...>
Subject: Re: [Gmod-ajax] JBrowse XML parsing errors

[△EXTERNAL]


Hi Vaneet,

This console log message is just a browser specific thing with Firefox, but as far as I know does not indicate anything is wrong. It is just something Firefox says when a .conf file is downloaded, but the .conf file is otherwise interpreted fine by the JBrowse code itself. I think you can ignore the message


-Colin

On Wed, Jun 1, 2022 at 11:59 AM Vaneet Lotay <van...@uc...<mailto:van...@uc...>> wrote:
Hi,

I attached a screenshot of the XML parsing errors from the console of my Firefox browser, which I'm a little confused about.  I checked the actual configuration files that these errors denote, and I don't see anything wrong or any hidden characters that are there on the first line.  I don't think these are file specific though as no matter what genome I switch to in JBrowse I see the same errors, that is those genomes for which I have an extra configuration file for functions that's named 'functions.conf'.  The jbrowse.conf error always appears.  I don't see any visible problem on the browser tracks that results from these errors but I just want to eliminate them to make sure.

After looking at the JBrowse 1 troubleshooting page, I took the suggestion to install the libexpat1-dev package and then rerun the setup.sh script, but errors are still there on Firefox.  If I load the page in Microsoft Edge browser, I don't see the errors there, so I'm wondering if it's browser specific? Is anyone aware of any fixes for this specific issue?

Thanks,

Vaneet
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